LOCUS       XM_006251944            3482 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TERF1 interacting nuclear factor 2
            (Tinf2), transcript variant X5, mRNA.
ACCESSION   XM_006251944
VERSION     XM_006251944.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006251944.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006251944.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3482
                     /gene="Tinf2"
                     /note="TERF1 interacting nuclear factor 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 24 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     119 samples with support for all annotated introns"
                     /db_xref="GeneID:290232"
                     /db_xref="RGD:1359192"
     CDS             1285..2376
                     /gene="Tinf2"
                     /codon_start=1
                     /product="TERF1-interacting nuclear factor 2 isoform X5"
                     /protein_id="XP_006252006.1"
                     /db_xref="GeneID:290232"
                     /db_xref="RGD:1359192"
                     /translation="MAPPPGVGPASLRFAAAASWLVVRRRQVEHFPRVVQFLESLRAA
                     VPGLVCYRHHERLCMGLKAKVVVELIVQERPWTQILNALNLHFPESRTTEQDRKLLEA
                     QENFCLLVKQLSEDPASSPQELEQDYGEPFLVAMEKLLFEYLCQLERVLPTVRAQELQ
                     DVLSWIQPGCSVTSSVALRQYGMDMGWPFPESPSGSVSPPQQTKPASHSPLPKAKLGP
                     LQPASQEHPEHLAGNRFNLAPLGKRKCPSQWTSAKACHKERPTVMLFPFRNTGLPSQD
                     IPNPKSKEEHEPEPVCTEKSKTPSQTLGKRALEETPPDSPATKQKENCVNCMDPLGYS
                     SPPSRVKKPGQLQPPSYKVRTAVRDSIDS"
ORIGIN      
        1 cacacctatt ccaacaaggt cacacctcct aatagtgtca ctcactccct ggaccaagaa
       61 tatttaaacc actacagact tactgctgaa taagctttca caacaatgta taacgagaga
      121 ttggatttcc actcagaacc atgcaagcaa caagggaatt gagtaaacta tttacaatac
      181 tgaaagcaga aataaaacag cccatctcac gctgggattt agaggtgtgc agcaccatac
      241 tctgtgagat gactctttag aaaaaatgaa agttataagg tcaaaaattc agatttgcat
      301 taaaatgaca gagaaattat gaagaaaatc agttacaact ttaacatcca catagtactt
      361 cagtactagg tcttggggct caaaagactg atctggagaa tggaggccaa atgtgaacct
      421 tgcgtctggg aatggaagaa accattcaaa taatgggaag gtctcattaa atacctgcaa
      481 ggtgagcaag gcagataatt caagcaacaa agtaagtata cacagtgtga cccgttctgt
      541 ctttggggat agcaaataag agtcaattca ctaaaaggct ccattaagtc agtgctcaaa
      601 agaaacttgg aaaaggaagc cttaactatt ctaaactaca caaaacagca aagatgtggc
      661 acggacaagc acaaaccggc tgtaatcctg tccaggagaa ccctggctag ccctgtggta
      721 tttcaaacta cattttattt gtttaggcgc cagcgagtca ggacagtagg gcggagctac
      781 cacccagccc tgtttgattt tttgaaagcg agcgccctct tctgttatgc gagaggaatg
      841 acaggatact tcctgggagc ggctggcggc ccggaagggc ttggcagatg ctgattcagg
      901 cacctaggtt tacagaacac cagcttgcag ggtggcgaag agtgacgcga ggccacatgt
      961 cactttcaca gttctgggga cttcgtgacg tcacagctcc ctctgaggcc tcttccgggc
     1021 cgggaagctg cgcgcccagt cggaagtgac gtaccctcgc gctccgcgca gtggcggcat
     1081 tttaagcttt gccgtctgga caggttgaca cactcagtca cggtctggga ggagactcta
     1141 ggattccggt ggctccccga aactggctaa agccagtccg ccggccttcc ggtgcagacg
     1201 agagaaccga agctccgcct acgggagcgt ctaggaagtc tgcgctgagg gaaagcggcg
     1261 cggaggaaag ggcgcccgcg agccatggcc ccacctccag gggtgggtcc cgcgtctctg
     1321 cggtttgctg ctgccgccag ctggctagtt gtccgccgtc gccaagtaga gcacttcccg
     1381 agagtggtcc agtttttgga gtcccttcgc gctgctgtcc ctggcttggt ttgctaccgg
     1441 caccatgaac gcctatgtat gggcctaaag gccaaggtgg tggtggagct gatcgtgcaa
     1501 gagcgaccct ggacccagat cctcaatgcc ctgaatcttc actttccaga gtccagaaca
     1561 acagaacaag ataggaagct tttggaggca caggaaaatt tttgcctgct tgtgaagcag
     1621 ctgtcagagg acccggcttc gagcccgcag gaactagaac aagactatgg ggaacccttt
     1681 ctggttgcca tggaaaagct gttgtttgaa tacttgtgtc agctagaaag agtactgcct
     1741 acagtcagag cacaagagct tcaggatgtt ctaagttgga ttcagccggg ctgctccgtt
     1801 acttcttctg ttgctttgcg ccagtatggt atggacatgg ggtggccgtt tccagagagt
     1861 ccttctggtt cagtgagtcc tcctcagcaa acaaaaccag catcccacag tcctctgcct
     1921 aaagctaagc ttggccctct ccaaccagct tcacaggagc atccagaaca tttagctggc
     1981 aaccgcttta atctggcccc tttgggaaag cgaaaatgcc catcccagtg gacatccgca
     2041 aaggcctgcc acaaagagcg gcccacagtc atgctgttcc ccttcaggaa cacaggccta
     2101 ccatctcaag acatacctaa ccccaaaagc aaggaagaac atgaaccaga accagtctgc
     2161 actgagaagt ccaagactcc atcacaaacc ttagggaaaa gggcattaga ggagaccccg
     2221 cctgactcac cggctacaaa gcaaaaggag aactgtgtga attgcatgga tcctctagga
     2281 tactcatcac caccttctag agtcaagaaa ccagggcagc tgcagcctcc gtcctacaaa
     2341 gtaagaactg ctgtgagaga cagcatcgat tcttaagact tctcaactgc ccatgtcaaa
     2401 gtggactaca actcatgtcc tgaccaggac ttgaccacag ccccacatgg agaaactcat
     2461 gtcctgacca ggacttgacc acagccccac acggagaaac tcatgtcctg accaggactt
     2521 gaccagagcc ccacacggag aaactcatgt cctgaccagg acttgaccag agccccacac
     2581 ggagaaactc atgtcctgac caggacttga ccagagcccc acacggagaa aacagtggct
     2641 gccgggcagc tgcaaacctc tccaggtctt tggtcttact gaaatgatgt ggcctttgag
     2701 gccatgagca gcatctgcac actccatcac tgcactgagc tgtggatacc caactccagt
     2761 tttcttccga gttgtacaga cagagcctgg ggagagatag aagtgagaat gaacggacct
     2821 gtggtttttg cctcccaaca ggatagatga gatggtagtt caaggaacca acttaccagg
     2881 accaattccc actttgatga tgtcagcccc agagaggatt agctcttcta ccatctctcc
     2941 tgttaccaca ttgcctgcct gagacaataa tcaaaacagc attcttaggg tcagtggtag
     3001 agagtagctt ttgtgctctc acataatcca cactttgacc gtgaccttcc tattacaaag
     3061 aaagggtacc taaagccctt ctacaggccc taccaccaac ttcaaggacc tagatcacag
     3121 ttacccatct acctcacata catactttga cttagtgcag aggatagggg aaaaccaggt
     3181 ccagaatgac ctttaaagca gcaaggtggg gcaacaagac aaaggggcct gaaagagcaa
     3241 ttggtgagtc aaacaccact caggtcgaca gcagtgcctc tcactaccag gtgactactg
     3301 cctggtcctg aagctttcta ccttgaaaaa aatggacaga aaccggaatg tgggctaaaa
     3361 tacccatttg ccaacagtat atgggcagta tgacatcctc cttcaatgct gtgcagaaaa
     3421 tgaagccttg gatttcgtct ctaataagct tctaaaaaat aaaacctagt ttttatatga
     3481 ta
//
