LOCUS       XM_006238978            1955 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tubulointerstitial nephritis
            antigen-like 1 (Tinagl1), transcript variant X2, mRNA.
ACCESSION   XM_006238978
VERSION     XM_006238978.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238978.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006238978.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1955
                     /gene="Tinagl1"
                     /gene_synonym="gis5; Lcn7"
                     /note="tubulointerstitial nephritis antigen-like 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 mRNAs, 63 ESTs, 1 long SRA read, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 98 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:94174"
                     /db_xref="RGD:70956"
     CDS             96..1499
                     /gene="Tinagl1"
                     /gene_synonym="gis5; Lcn7"
                     /codon_start=1
                     /product="tubulointerstitial nephritis antigen-like
                     isoform X1"
                     /protein_id="XP_006239040.1"
                     /db_xref="GeneID:94174"
                     /db_xref="RGD:70956"
                     /translation="MWGCPLGLLLLLLAGQAALEARRSRWRRELAPGLHLRGIRDAGG
                     RYCQEQDMCCRGRADECALPYLGATCYCDLFCNRTVSDCCPDFWDFCLGIPPPFPPVQ
                     GCMHAGRIYPIFGTYWENCNRCTCHEKGQWECDQEPCLVDPAMIKAINRGNYGWQAGN
                     HSAFWGMTLDEGIRYRLGTIRPSSSVMNMNEIYTVLGQGEVLPTAFEASEKWPNLIHE
                     PLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTHHQKGCRGGRLDG
                     AWWFLRCRGVVSDNCYPFSGREQNDEASPTPRCMMHSRAMGRGKRQATSRCPNSHVDS
                     NDIYQVTPVYRLASDEKEIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPVSQGRPE
                     QYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERGHFRIVRGTNECDIET
                     FVLGVWGRVGMEDMGHH"
ORIGIN      
        1 tgcgctcctc acttgactcg gtctggcagt ctcgagcttg gaggcggagg cgcgcagggc
       61 agcctgggtc cagcccacac ccctcaccag gcaccatgtg gggatgtccg ctagggctgc
      121 tattgctgct gctggctggc caggctgccc tggaggcccg gcggagtcgt tggcgcaggg
      181 agctggcgcc agggctgcac ctgcggggca tccgggacgc cggtggcaga tactgccaag
      241 agcaggacat gtgctgccgc ggccgtgctg acgagtgtgc tttgccctac ctgggagcca
      301 cctgttactg tgacctcttc tgcaaccgca ccgtctctga ctgctgccct gacttttggg
      361 acttctgcct cgggattcca ccccccttcc ctcctgtcca aggttgcatg catgcgggcc
      421 ggatctaccc aatcttcgga acctattggg aaaactgcaa tcggtgcacc tgccatgaga
      481 aagggcagtg ggaatgtgac caggagccat gtctagtgga cccagccatg attaaagcca
      541 tcaaccgggg caactacggg tggcaggctg ggaaccacag tgccttctgg ggcatgaccc
      601 tggatgaggg cattcgatac cggctgggca caatccgccc atcttcctct gtcatgaata
      661 tgaatgagat ttatacggtg ctgggacaag gagaagtgct acccactgcc tttgaggctt
      721 ccgagaagtg gcccaacctg atccatgagc cgctggacca gggcaactgt gcgggttcct
      781 gggccttctc cacagcagct gtcgcatctg accgagtgtc catccattct ttgggacaca
      841 tgacacccat cctctcaccg cagaacctgc tatcctgtga tacccaccac cagaagggct
      901 gccgaggtgg gcgtctcgat ggtgcttggt ggttcctgcg gtgccgaggg gtggtgtctg
      961 ataactgtta cccattctcc ggccgtgagc agaacgacga ggccagcccc actcctcgat
     1021 gcatgatgca cagccgcgcc atggggcggg gcaagcgcca ggccacttct cgctgcccca
     1081 atagtcatgt tgattccaat gacatctacc aggtcacgcc tgtctaccgc ctggcctccg
     1141 atgagaagga gatcatgaag gagctaatgg aaaatggccc tgttcaagcg cttatggaag
     1201 tacacgaaga cttcttcttg taccagcgag gcatctacag ccacacacct gtaagccagg
     1261 ggaggccaga gcagtaccgc cgacacggga ctcactctgt caagatcaca gggtggggag
     1321 aagagacact gccagacgga aggacgatca agtactggac tgctgccaac tcgtggggcc
     1381 catggtgggg tgagaggggc cacttccgaa tcgtgcgtgg caccaacgag tgtgacatcg
     1441 agaccttcgt gctgggcgtc tggggccgag taggaatgga ggacatgggg caccactgag
     1501 tctcggccac taagctaggt gggatccaca gccacagaag aggccttggg ggccacgccg
     1561 atgaggcctt gggaccaggt gctaatcccc tcagactcag atccacacaa acgcagaacc
     1621 ccacctggga gctaatgtcc ctcagggagc aacagtgagg ctggagggaa ccctcagaca
     1681 tcacagccgg aactggaaag ggcccggctt ggaaactgca gggagtaaaa ttcccaggcc
     1741 cctggtcagc cagcccaaga ccatgggagc taagacaccc caacctcttc atcctcctac
     1801 ccaacctcat tcttattttt tcattctcct tggtggattc tgcccatccc cctggcctcc
     1861 gttctggctg gacctttcca tcctcaacac tgctttctta ctctttaaaa atatttattt
     1921 ttcttttcat taaaataaaa ccaaagtatt gataa
//
