LOCUS       NM_001108249             850 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus translocase of inner mitochondrial membrane 17b
            (Timm17b), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001108249 XM_001063717 XM_228758
VERSION     NM_001108249.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Sinha,D., Joshi,N., Chittoor,B., Samji,P. and D'Silva,P.
  TITLE     Role of Magmas in protein transport and human mitochondria
            biogenesis
  JOURNAL   Hum Mol Genet 19 (7), 1248-1262 (2010)
   PUBMED   20053669
REFERENCE   3  (bases 1 to 850)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
REFERENCE   4  (bases 1 to 850)
  AUTHORS   Bauer,M.F., Gempel,K., Reichert,A.S., Rappold,G.A., Lichtner,P.,
            Gerbitz,K.D., Neupert,W., Brunner,M. and Hofmann,S.
  TITLE     Genetic and structural characterization of the human mitochondrial
            inner membrane translocase
  JOURNAL   J Mol Biol 289 (1), 69-82 (1999)
   PUBMED   10339406
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Oct 20, 2007 this sequence version replaced
            XM_228758.4, XM_001063717.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DV215361.1, SRR26643285.22020.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000021.1  17275266-17275340   c
            76-175              JAXUCZ010000021.1  17273774-17273873   c
            176-239             JAXUCZ010000021.1  17271193-17271256   c
            240-368             JAXUCZ010000021.1  17268916-17269044   c
            369-479             JAXUCZ010000021.1  17268724-17268834   c
            480-850             JAXUCZ010000021.1  17268257-17268627   c
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..850
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /note="translocase of inner mitochondrial membrane 17b"
                     /db_xref="GeneID:317374"
                     /db_xref="RGD:1561744"
     exon            1..75
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..568
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /note="mitochondrial import inner membrane translocase
                     subunit Tim17-B-like"
                     /codon_start=1
                     /product="mitochondrial import inner membrane translocase
                     subunit Tim17-B"
                     /protein_id="NP_001101719.1"
                     /db_xref="GeneID:317374"
                     /db_xref="RGD:1561744"
                     /translation="MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAVKGFRNAPVGI
                     RHRFRGSINAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAV
                     LAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQQFRNAPPFLEDPNQLTPKEGA
                     PAPGYPNYQQYH"
     exon            76..175
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /inference="alignment:Splign:2.1.0"
     exon            176..239
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /inference="alignment:Splign:2.1.0"
     exon            240..368
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /inference="alignment:Splign:2.1.0"
     exon            369..479
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /inference="alignment:Splign:2.1.0"
     exon            480..850
                     /gene="Timm17b"
                     /gene_synonym="RGD1561744"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagtggctc tcccgcgcga ccgactgctc caggccggac gctggcgcca tggaggagta
       61 cgctcgcgaa ccttgcccgt ggcgaattgt ggatgattgt ggcggagcct tcaccatggg
      121 tgtcattggt ggtggagtct tccaggctgt caagggcttc cgcaatgccc ctgttggaat
      181 tcgacaccgg ttcagaggta gtatcaatgc tgtgaggatc cgagcacccc agattggagg
      241 tagctttgca gtatggggtg gcctgttttc caccatcgac tgtggcctgg tccggctgcg
      301 gggcaaagaa gacccctgga actccatcac cagtggagca ttgaccggag ccgtgttggc
      361 tgcccgcagt ggtccgctgg ccatggtggg ctctgcgatg atggggggca tcctgttggc
      421 cctcattgag ggtgttggca tacttctcac ccgctatact gcccagcagt tccgcaatgc
      481 acccccattc ttggaggacc ccaaccagct aacccctaaa gagggagctc cggccccagg
      541 ttaccccaac taccagcagt accactgagg aagccgctgt ctgcccctgc caccgtggga
      601 gctgctcctc agttccctcc cggatgatct acctccaagg gaggactggc tcctacatag
      661 ccctgagacc ttcacagagg gcctctattc tactctcttg tggtaggggt gggggcaccc
      721 cagcagcctt gtcacatggg ttcccgtctt gtgtctcagg gcttcacagc tccacacatg
      781 taacaattct ctcaccccag atccctcgtg tggcaccctg atgaatgttt aaagccagtt
      841 tggaaatgtc
//
