LOCUS       XM_039079953            4589 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus timeless circadian regulator
            (Timeless), transcript variant X6, mRNA.
ACCESSION   XM_039079953
VERSION     XM_039079953.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4589
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4589
                     /gene="Timeless"
                     /gene_synonym="rTIM; rTLP; Tim"
                     /note="timeless circadian regulator; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 24
                     ESTs, 1 long SRA read, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 51 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:83508"
                     /db_xref="RGD:620939"
     CDS             202..3774
                     /gene="Timeless"
                     /gene_synonym="rTIM; rTLP; Tim"
                     /codon_start=1
                     /product="protein timeless homolog isoform X5"
                     /protein_id="XP_038935881.1"
                     /db_xref="GeneID:83508"
                     /db_xref="RGD:620939"
                     /translation="MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRH
                     EDETRDVRQQLGAAQILQSDLLPILTQHRQDKPLFDAVISVPKDPTVRHHFLQVLTYL
                     QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLLIERILLLVRNILHVPANLEQ
                     EKRIDDDASIHDRLLWAIHLSGMDDLLLFLSSSSAEQQWSLHVLEIISLMFRDQKPEQ
                     LAGVGQGRLAQERSTDLAELEVLRQREVAEKRARALQRGNRHSRFGGSYVVQGLKSIG
                     ERDVVFHKGLHNLQNYSSDLGKQPRRVPKRRQAAQELSVHRRSVLNVRLFLRDFCSEF
                     LENCYNPLMGAVKDHLLREKAQQHDETYYMWAMAFFMAFNRAAAFRPGFVSETLSIRT
                     FHFVEQNLTNYYEMMLTDRKEAASWARRMHLALKAYQELLATVNEMDMCPDDAVRESS
                     RIIKNNIFYMMEYRELFLALFRKFDERYHPRSFLCDLVETTHLFLKMLERFCRSRGNL
                     MVQNKRKKRKKKKKAQEQGVAFSRSPEELQAMWSALAERLLQCAQEPELSVDSIIPFD
                     AASEVPVEEQRVEAMVRIQDCLVAGQAPQALALLRSAREVWPEGNVFGSPVISPGEEM
                     QLLKQILSATLPRQQEPVEGDAEEEDEEEEEEEEEELQVVQVSEKEFKFLDYLKRFAC
                     STIVRAYVLLLRSYRQNSAHTNHCIAKMLHRLAHDLGMEALLFQLSLFCLFNQLLSDP
                     AAAAYKELVTFAKYILGKFFALAAVNQKAFVELLFWKNTSVVREMTQGYGSLDSGSCS
                     HRAPVWSSEEEAQLQELYLAHKDVEGQDVVETILAHLKAVPRTRKQVIHHLVRMGLAD
                     SVKDFQRKGTQIVLWTEDQELELQRLFEEFQDSDDVLGHIMKNITAKRSRARVVDKLL
                     ALGLVSERRQLHKKRRKKLAPSCMQNGEESQRDAWQEDPEEEEEKEGLPESEGEENEE
                     DLLAGQVQGSSSLSAENLRQSLCQDGLSAPLLWLQSSLIRAADDREEDGCSQAIPLVP
                     LTEENEEAMENKQFQHLLRKLGIRAPCSGQETFWRIPAKLSSTQLRRVAASLSEQENK
                     EEREEEPEPNPGVPGEQSPSEEHQVRAPRALLSARKRKAGLVFPKEEATGEEEWKSVP
                     KKQQLLDSDEEDTDDERGGQAAVSGTLRIHKKKRFLVEDEDEDY"
ORIGIN      
        1 ccccgctcgc cccgccccgt gcccgcccgc gcaggcgcgg actggtcgct ctctgccgag
       61 tggcgggaaa gtctgcgacc ccgcacctca cggccactgg ccctgcgagc cttcagagga
      121 ctcatggata gtggtcccat aggcctcacc gtttccatct gccatctccc tcgtctgttc
      181 tgctggtagg gcctctggtg tatggacttg tacatgatga actgtgaact tctagccact
      241 tgtagcgccc ttgggtactt ggaaggaggc acttaccaca aggagccgga ctgcttggag
      301 agtgtgaagg atttgatccg atacctgagg catgaggacg agactcgaga tgtgcggcag
      361 cagctgggag ccgcgcagat cctgcagagt gatctcctgc caatcctcac ccagcaccgc
      421 caggacaagc ctctctttga tgctgtgatc agcgtgccta aggaccccac tgtacgacac
      481 cattttctgc aggttctaac ctacctgcag gcctacaaag aggcctttgc cagtgaaaag
      541 gcatttggag tcctcagcga aaccttgtat gagctactgc agctgggctg ggaggatcgg
      601 caagaagaag acaacttgct gattgaacgg atccttctgt tggtcagaaa tattctccat
      661 gtcccagcca accttgagca ggagaagagg atcgatgacg atgccagcat tcatgaccgg
      721 cttctgtggg caattcacct cagtggcatg gacgacttgc tcctcttcct gtccagctca
      781 tccgctgagc agcagtggag cctccatgtg ctggagatca tctccctcat gttccgagac
      841 cagaagcctg agcagctggc aggagtaggg cagggacgct tggctcagga gcgaagcaca
      901 gatttggcag aattggaagt gctgcgccaa cgggaggtgg ccgagaagag agcccgagcc
      961 ctgcagcgag gaaacaggca ctctcgattt gggggctcct atgttgtcca ggggttgaaa
     1021 tctattgggg agagggatgt cgtctttcac aaaggccttc acaacctcca gaactacagc
     1081 tcagatctag gaaagcagcc ccggagggtg cctaagcgtc gtcaggctgc ccaggagctg
     1141 tctgtccatc gccgctctgt cctgaatgtg aggctcttcc tcagagactt ctgctctgag
     1201 ttcctggaga actgttacaa cccactcatg ggtgcagtca aggatcacct gcttcgggag
     1261 aaagctcagc aacatgatga gacgtactac atgtgggcga tggctttctt tatggccttc
     1321 aaccgagctg ctgccttccg ccctggcttt gtctctgaga ccctcagtat ccggaccttt
     1381 cactttgtgg agcagaacct caccaactac tatgagatga tgctgacaga ccgcaaggag
     1441 gccgcctcct gggcacgcag gatgcacctg gctctgaagg cctatcagga gctgctggcc
     1501 acagtgaatg agatggacat gtgcccagac gacgctgtca gggagagcag tcgcatcatc
     1561 aaaaacaaca ttttctacat gatggagtac cgagaactat ttctggcact ctttcgaaaa
     1621 ttcgatgaga gataccatcc acgttcattc ctttgtgacc tggtggagac cactcacctc
     1681 ttcctcaaaa tgttggagcg cttctgtcgg agccgaggga acctgatggt gcagaacaaa
     1741 agaaagaaga gaaaaaagaa aaagaaggcc caggagcagg gtgttgcttt ctcacgtagc
     1801 cctgaggagc tgcaggccat gtggtcagcg ctggcagagc ggctgctgca gtgcgcccag
     1861 gaacctgagc tcagtgtgga ctccatcatt ccctttgatg cggcctcaga ggtgccagtg
     1921 gaggagcagc gggtagaagc tatggtgagg atccaagact gccttgtggc tggccaggcc
     1981 ccgcaagcct tggcccttct gcggtctgcc cgggaagtgt ggcctgaagg aaatgtgttt
     2041 ggctctccag tcatttcccc aggggaagaa atgcagttgc taaaacaaat cctctctgca
     2101 acccttcccc ggcagcagga gccagtagaa ggagatgcag aggaggaaga tgaagaggag
     2161 gaggaggagg aagaggagga gttacaggtg gtccaggtgt cagagaagga gtttaagttt
     2221 ttggactact tgaaacgctt tgcatgctca accattgtgc gagcctatgt gcttctcctg
     2281 cggagctacc ggcagaacag cgctcacacc aaccactgca tcgccaagat gctgcaccgg
     2341 ctggcccatg acctggggat ggaagccctg cttttccagc tctccctgtt ctgcctcttc
     2401 aaccagctac tcagtgaccc agccgctgca gcctacaaag agctagtgac ttttgccaaa
     2461 tacatcctcg gcaagttctt tgcgttggct gcagtgaacc agaaagcatt tgtggagctg
     2521 ctgttctgga agaacacctc ggtggttcgg gaaatgaccc agggatatgg ctcccttgac
     2581 agtgggtctt gcagccacag agcccctgtg tggagctctg aggaagaggc ccagcttcaa
     2641 gaactatacc tcgcccacaa ggatgtagaa ggtcaggatg tagtggagac catcttggca
     2701 cacctgaaag ctgtccctcg gacacgcaag caggtcatcc accatctggt acgcatgggc
     2761 ctggccgaca gtgtcaagga cttccagagg aaagggaccc agattgtctt gtggacagag
     2821 gatcaggagc tggagttaca gcggctcttt gaggagttcc aggattccga tgatgttctt
     2881 ggtcatatca tgaagaatat cacagccaaa cgttcacggg ctcgagtagt ggacaaactg
     2941 ttggccctgg gactcgtgtc cgagcgcagg caactgcaca agaaacggag gaagaagctg
     3001 gcgccctctt gcatgcagaa tggggaagag tcccagagag atgcttggca ggaagatcca
     3061 gaagaagaag aggaaaaaga aggcttgcca gagagtgagg gtgaggagaa cgaggaagac
     3121 ttgttagcag gacaggtcca gggcagctca tctctttctg ctgaaaacct ccgtcagagc
     3181 ctttgtcagg acggcctctc tgctcccctc ctgtggctcc agagctccct gattcgcgca
     3241 gcagatgacc gagaagagga tggctgctcc caggccatcc ctctggtgcc tctgacggaa
     3301 gaaaatgagg aagcaatgga gaacaaacag tttcagcatc tgctacgtaa gctaggaatc
     3361 cgggccccct gctcaggaca ggaaaccttc tggcgaattc cagccaaact gagctccacc
     3421 cagcttcgga gagtggctgc ttctctgagt gagcaagaaa acaaggagga aagagaggag
     3481 gagccagagc cgaatccagg agtccctgga gagcagagtc ccagtgagga gcaccaagtg
     3541 agagccccga gagccctttt gtcagctcgt aaaaggaaag caggcctggt gtttccaaaa
     3601 gaggaggcca ctggggagga agaatggaaa tcggtgccta agaagcagca actgctggac
     3661 agcgacgaag aggacaccga cgacgagagg ggagggcaag cagcagtgtc gggaaccctg
     3721 agaatccaca agaagaaacg gtttctggtt gaggatgaag atgaggatta ctgaagcctt
     3781 tgacagatgc cagttggaag gcacagaagc tatttcacct tgcctgcatt caaagcaatc
     3841 tcctctagga gttttaggca ccagtgagaa gagcagggag atgctaaggt ggccgggact
     3901 cctctctggg ctgtcttcac acagggagct tcataccaca tgacacgtgt gttcatacca
     3961 tcctcaccag gtactggact cattttctct cagtggttga acccaggaca catgattgtg
     4021 cccgttactg cagttgggta gagttgggat acactactct caagctgaca agcatccttg
     4081 atttgtgttt cttattaaac gtgtaaaatt aacaattgct gatctcaaag ggaccaacca
     4141 gtcttctgtt gtgtctctgg aacagaagaa ggttaagtgc tcgcttcggc agcacatata
     4201 ctaaaattgg accaatacag agaagatgag catggcccct gcacaaggac gacacacaaa
     4261 ttcatgacac gttccatatt taaaaaaaaa aaaaaaagag ggggctgggg atttagctca
     4321 gtggtagagc gcttggctag gaagcgcaag gccctgggtt cagtccccag ctccgaaaaa
     4381 aagaaccaaa aaaaaaaaaa agaggaaagt taaaagacat ttcctgaact gagcgtggta
     4441 gcatgacctt ctactcccag aatgtggaag agagaagcaa gaggattgat ttcctgaggg
     4501 ggaggggaaa gagtgacata ccctctgcct gggccaataa atgtaataaa aaaaatcagc
     4561 ctgacaataa atgtgatttt aaaaagaga
//
