LOCUS       XM_039087154            2136 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus T-cell immunoglobulin and mucin domain
            containing 4 (Timd4), transcript variant X1, mRNA.
ACCESSION   XM_039087154
VERSION     XM_039087154.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087154.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2136
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2136
                     /gene="Timd4"
                     /note="T-cell immunoglobulin and mucin domain containing
                     4; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     11 samples with support for all annotated introns"
                     /db_xref="GeneID:497891"
                     /db_xref="RGD:1564516"
     CDS             13..1119
                     /gene="Timd4"
                     /codon_start=1
                     /product="T-cell immunoglobulin and mucin
                     domain-containing protein 4 isoform X1"
                     /protein_id="XP_038943082.1"
                     /db_xref="GeneID:497891"
                     /db_xref="RGD:1564516"
                     /translation="MSKGLLLLWLVMELWLLCLTPAASEDTIIGFLGQSVTLPCQYSS
                     WSQSRNSMCWGRGSCPGSKCNGELLRTDGTRTISRKSGKYTLWGSIRLGDVSLTISNT
                     NQDDSGVYCCRIEVPGWFNDVKKTVRLELRRATTTKRPTTTTRLTTRPTTQPTTRPTT
                     TPYLTTTPEPLPTTVMTTPDPTTTAQPQTLATTAVGTAVTMYPSTMPGSFSQKTTSFS
                     TTEIFTKGSAITAESETLSAFNNSQRSGMTISTDTALVRPTGSKAWILSSTSQLMTQK
                     TTLTATTRRESSKKTGELYKIEDRQTNILIIACCVGFVLMVLLFLAFLLRGKVAEANC
                     LRRHRRPDNTEDTPLRGNRDCEMDQLENGTCCQT"
ORIGIN      
        1 gatcctgtca aaatgtccaa ggggcttctc ctcctctggc tggtgatgga actctggttg
       61 ctttgtctga caccagctgc ctctgaggat acaataatag ggtttttggg ccagtcggtg
      121 actttacctt gtcagtactc atcctggtcc cagagccgca acagcatgtg ctggggcaga
      181 ggttcatgtc ccggttcgaa gtgcaatgga gagcttcttc gtacagacgg aacaaggacc
      241 atctccagga agtcaggaaa atacacactt tgggggagta tccggttagg tgatgtgtcc
      301 ttgaccatct caaacaccaa tcaagatgac agtggggtgt actgctgccg tatagaggtg
      361 cctggctggt tcaatgatgt caagaagaca gtgcgcctgg agctgaggag agccacaaca
      421 accaaaagac ctacaacaac cacccggcta accacccggc caaccaccca gccaaccacc
      481 cggccaacca ccacccctta cttgaccact accccagagc cgcttccgac aacagtcatg
      541 accacacctg atcccacaac cacggcccag ccccagacgc tggctaccac tgcagtgggt
      601 acagcagtaa ccatgtaccc ctcaacaatg cctggctcct tctcacaaaa aaccacaagt
      661 ttttcaacca cagagatctt cacaaaaggg tctgccatca ctgcagaatc ggaaactctt
      721 tctgcattca acaactctca aagaagcggg atgaccatat ctacagacac agccttagtc
      781 agacccacag ggtccaaggc ttggattctc tcatcaactt cacagctgat gacacagaaa
      841 acaacattaa cagcaacgac gaggagagag tcttctaaga agacaggtga attatataag
      901 attgaggaca gacagaccaa catcttgatc atcgcctgct gtgtggggtt tgtgctgatg
      961 gtgttattgt ttctggcgtt tctccttcga ggaaaagtcg cagaagccaa ttgtttgcgg
     1021 agacacagga ggccagacaa caccgaagat acacctttaa gaggcaacag agactgtgag
     1081 atggatcagc tggaaaacgg aacttgctgc caaacttgat gactttaagt ttaatctctc
     1141 ggacccccat agtggaagga gaggtcctgt tcttgcaagt tttccaaata tgtgccatag
     1201 cgtgtacctt ctcatattat atacatgtac acaacgtaat aaaataaaac atatagacac
     1261 aaaaaaggca aacaaaatag cccccatggt atagcctaga gatctattac cctgttagtt
     1321 gacatggcat gatttgattg ggaagaaccc actcccagcc ctctcacaga catagaggag
     1381 cgcagttcat cctattgtat ggagcaggaa ggatgggaac cattagctac agagcagcag
     1441 ctacttctct tctcttttac tcatcctgag gctagtgtaa gctgcggaag tcttgtcatt
     1501 tagaaactaa ggcgtactag agtcaagttc aggaacatag tattgtcact tggaaaagta
     1561 gaggttgacc agatgtctta ataggtaatc agttgtagta ccatatgagc ctatggaagc
     1621 cctcttccca tcttagctcc cactcccact ccctgtccat cttctaagcc actcccacca
     1681 gcagttaaca acttaagtct gactagaaga aagacaggag gaaggttcta aacagtattt
     1741 aattttgctc aatgactatt gtcaatcatt ctccaatatt gctctcaaga ttcctgggtc
     1801 agactgagca atacttttat gaacatccat tgcgttttac atgtagttat gacctccaga
     1861 agtcttgact ggaggaaccc ccaaccttag gagaattctg cagtcaaatg aggactttta
     1921 aaaataggaa tctctgggtt ctagtcctat agagattctt ttgtggttag tcccgggtat
     1981 gagttgagca tctgaatatt tttttaagga cccaaaggag tgcaaccaga gctatttcca
     2041 gaattttgga atgatcccct agagttgcca catgttgctg ggaaaattgg agtcttagag
     2101 ttcttagtgt gcttaataaa agaattttta aaaatg
//
