LOCUS       NM_001126268            2545 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus tigger transposable element derived 5 (Tigd5),
            mRNA.
ACCESSION   NM_001126268 XM_001074511 XM_235436
VERSION     NM_001126268.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161993.1.
            
            On May 11, 2008 this sequence version replaced NM_001126268.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC161993.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..2545
                     /gene="Tigd5"
                     /note="tigger transposable element derived 5"
                     /db_xref="GeneID:300034"
                     /db_xref="RGD:1311576"
     exon            1..2520
                     /gene="Tigd5"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..2070
                     /gene="Tigd5"
                     /note="tigger transposable element-derived protein 5;
                     tigger transposable element derived 5 homolog"
                     /codon_start=1
                     /product="tigger transposable element derived 5"
                     /protein_id="NP_001119740.1"
                     /db_xref="GeneID:300034"
                     /db_xref="RGD:1311576"
                     /translation="MYPASPSAGPALHPVPHRARLPRPRCLAEPPRSPAPGPGSTARP
                     PPPAPGPRPRVAVKMTFRKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLK
                     DEPKLRWFLDQLGGEVGTQRKKMRLANEEEIDRAVYSWFLTLRQHGVPLSGPVIQAQA
                     EAFARQIYGPECTFKASHGWFWRWQKRHGISSQRIYGEAEPPVAGPAPVKEEPAQPSS
                     AGLLLDGTPATLPHSEGGYGDEQIYNANVTGLYWRLLPEQNATPGTGDSREPGECSRR
                     WCSDRVTVLLAANLTGSHKLKPLVIGQLPDPPSLRHHNQDKFPASYRYSPDAWLSRPL
                     LRGWFFEEFVPGVKRYLRRSCLQQKAVLLVAHPPCPSWTTSMPAVEESEGTPRQCQPE
                     LLGSPEELQTPDGAVRVLFLSRGNSRAHIPAPLEHGVVAAFKHLYKRELLRLAVSCAS
                     GSPLDFMRSFMLKDMLYLAGLSWDLVQAGSIERCWLLGLRAAFEPGQQPAHQVEEAAE
                     HSRMLSDLTHLAALAYKRLAPEEVAEWLHLDDDGGLPEGCGEEVAPAAPPSPASLPSS
                     IGAGEEEEEEATEQGGVLVPTAGEAVWGLETALRWLESQDPREVGPLRLVQLRSLITM
                     ARRLGGIGPSAAASDDGV"
ORIGIN      
        1 ggcgggactt gcgggccggt gcaagcaagg ctggcgagac aaaagggagg gacccgggca
       61 gtcccgcccc cgagccccgc cccaagcggc ccgcgcgggg tgtcagactc gctatctcgg
      121 gtggtccctg gcgccgacgc catgtacccc gcgagccctt cagccggccc agccttgcac
      181 ccggtccctc atcgcgctcg tcttccccgg ccccggtgcc ttgcggagcc accgcgatcg
      241 ccggcgcccg gcccgggttc cacagcgcgc ccaccgcccc cagcacccgg gccgaggccc
      301 cgggtggccg tgaagatgac tttccgtaag gcctactcca tcaaagacaa gctacaagcc
      361 atcgagcgcg tcaagggcgg tgagcggcag gccagcgtgt gccgcgactt tggcgtgcca
      421 ggaggcacac tgcgcggctg gctcaaggac gagcccaagt tgcgctggtt tttggaccag
      481 ctaggtggag aagtgggcac gcagcgcaag aagatgcgtc tggccaacga ggaggagatc
      541 gaccgcgccg tctactcgtg gttcctcacc ttgcgccagc acggcgtgcc actgtccgga
      601 ccagttatcc aagctcaggc tgaggccttt gctcgccaga tctacggccc cgagtgtacc
      661 ttcaaggcta gccacggctg gttctggcgc tggcagaagc gccatggcat ctctagccag
      721 cgcatctatg gtgaggctga gcccccggtc gcaggacccg cgcctgtcaa agaggagcct
      781 gcgcagccct cgagcgcagg tcttctactt gacggtacgc cggccactct accccattcc
      841 gagggtggct atggcgacga gcagatctac aatgctaacg ttactggtct ttattggagg
      901 ttacttccgg agcagaacgc aactccgggc actggggact ccagggagcc tggtgagtgc
      961 agccggcgct ggtgtagcga ccgagtgaca gtactgctgg ctgccaacct gacgggcagc
     1021 cacaagctaa aaccactagt catcgggcag ctaccagacc cacccagcct gcgtcaccac
     1081 aaccaggaca agttcccagc ctcctaccgc tacagtccag atgcctggct cagccgccct
     1141 cttcttcggg gctggttctt cgaggaattc gtccctggtg tcaagcgcta cctgcgccga
     1201 agctgcctgc aacagaaggc tgtgctgctg gtggcccatc caccctgtcc aagctggacc
     1261 actagcatgc ctgccgtgga ggagagcgag gggactccca ggcagtgcca gcctgagctc
     1321 cttgggtccc cagaggagct tcaaacacct gatggtgcgg ttcgagtcct cttcttgtcc
     1381 aggggcaaca gccgagcaca catccctgca ccgttggagc atggtgtggt ggcagccttc
     1441 aagcatttgt acaaacggga gcttctgagg cttgccgtgt cttgtgccag tggctctcct
     1501 ctggacttca tgaggagctt catgctcaag gacatgctat acctggctgg cctctcttgg
     1561 gacttggtcc aggcaggcag catagagcgc tgctggctgc tgggtctgcg agcagccttt
     1621 gagcctgggc agcagcctgc ccaccaggta gaggaggctg ccgaacacag caggatgctc
     1681 agtgacctca cacatctggc agctctggct tacaaacgcc tggcacctga agaggtggca
     1741 gagtggctac acctggatga tgatggaggt ctccctgagg gttgcggaga agaagtggcc
     1801 cctgcagctc ctccatcccc agctagcctg ccctccagca ttggggctgg agaggaggag
     1861 gaggaagagg ccactgaaca aggaggagtt ttggtcccca ctgctgggga agctgtttgg
     1921 ggactagaga cagctctgag gtggttggaa agtcaggatc ctagagaagt gggaccgctg
     1981 aggcttgtgc agctacggtc cctcatcacc atggcacgga ggcttggggg cattggcccc
     2041 tcagcagcag cttctgatga tggtgtgtga ctaccctggc ccagtggcct ctctcctgcc
     2101 gcactgggag agagggggca tacacagtcc tcccccttcc accttttctc cctggtagtc
     2161 cactgtagag gtccagggat gcaagcccag cccagcttgg aggatgaact acccggtgat
     2221 ccacagggtc ctggagaagt acctaaaaga agcaaattgt tcttccctgg gtaggcacat
     2281 gtgggcacat aagcacagca cctactggaa aacagttgac tgtacttcca ttctggcccc
     2341 tatggggcac gcgcgagcac acacaggcac acgcacaggc acacgcacac acatcccggc
     2401 ctccatgtgc tctggatgag gctgttgttt catctgcctc cctggtgcta cctggtctca
     2461 tctccgtggg gaagcacttg gttttgtttt aaaaacacat taaacctgtt tggaaagatg
     2521 aaaaaaaaaa aaaaaaaaaa aaaaa
//
