LOCUS       NM_001399762            3353 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus tigger transposable element derived 4 (Tigd4),
            mRNA.
ACCESSION   NM_001399762 XM_006232552
VERSION     NM_001399762.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 14, 2022 this sequence version replaced XM_006232552.4.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643296.6390.1, SRR26643295.9437.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3353              JAXUCZ010000002.1  172237156-172240508
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3353
                     /gene="Tigd4"
                     /note="tigger transposable element derived 4"
                     /db_xref="GeneID:102550932"
                     /db_xref="RGD:1305780"
     exon            1..3353
                     /gene="Tigd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..1765
                     /gene="Tigd4"
                     /note="tigger transposable element-derived protein 4-like;
                     tigger transposable element derived 4 homolog"
                     /codon_start=1
                     /product="tigger transposable element-derived protein 4"
                     /protein_id="NP_001386691.1"
                     /db_xref="GeneID:102550932"
                     /db_xref="RGD:1305780"
                     /translation="MAEASLDAGTPPVTVKKKKSLSIEEKIDIINAVESGKKKAEIAA
                     EYGIKKNSLSSIMKNKDKVLEAFESLRFDPKRKRLRTAFYTDLEEALMRWYRIAQCLN
                     VPVNGPMLRLKANDFAQKLGHNDFKCSNGWLDRFKSRYGLVFRAQPVEATGVSTDPSA
                     VWYQNVLPYYLNDYHPKNIFNVKETGLLYRMLPTNTFAFKGETCSIGKLCKDRITLAL
                     GTNVDGSEKLPLLIIGKNRAPHCFKGVKSLPVYYEANRTARMTAVIFEQWMQKLDEKF
                     QAQKRRVVIFVDSLPAHPEVKNLKSIELAFFPSCLSSGFAAMNQGVIKSLKIKYRHCL
                     IKKFLSSVESSKEFTFSLLDAVDTLHLCWRAIAPETIVKCYEEAGFSSPRGETDTANA
                     EEDAAALDLTAHAVGAGVEFLEGLSIEGYAALDEDLETCEDAPKDGAEWDEESKQDVT
                     GFYTSDEEEEDSGALEVDLPLPSTNEALTALGTLKRFLRSHDMNDELHSSLADLENFI
                     NTLSPK"
ORIGIN      
        1 aaggtggtgc ctctcctaat cgcatatagg gttttcttca gacttttggg aaagacgcga
       61 ctagttgttt tcctagagaa tgagactgtt ggtacttacc aacgttagta caggaaatgg
      121 taggtagaaa gccctggtcc acatcctact gaaaactaaa tgtgaaacag aaacttacac
      181 caggagctca gagccaaggt ctgcacgagc cgccgctgag atggcagaag cctcgctgga
      241 tgccgggact ccgccagtaa ccgtgaagaa aaagaaaagc ctgtccattg aggaaaagat
      301 cgacatcata aatgcagtgg aaagtggcaa gaaaaaggca gagatcgcag ctgaatatgg
      361 tataaagaaa aattcattgt cttccattat gaaaaacaaa gacaaagttc tagaagcctt
      421 tgagtctttg agatttgatc caaagagaaa aaggctgagg acggcgtttt atacggatct
      481 ggaagaggca ctgatgaggt ggtatcgaat tgctcagtgt ctgaacgttc cagttaacgg
      541 tccaatgctg cgtctaaaag ctaatgattt tgcccagaag ctggggcaca atgattttaa
      601 gtgcagcaat ggttggctgg accgttttaa gtccaggtat ggcttagtct tcagagcaca
      661 acccgtagaa gccacgggtg tatctacaga cccttcggct gtgtggtacc aaaatgtgct
      721 gccttattat ttaaacgatt atcatcctaa aaacattttc aatgtaaaag agactggact
      781 gctttatcga atgttaccta caaatacttt tgcattcaaa ggagaaacat gttcaattgg
      841 aaagctgtgc aaagacagga taacgctggc actcggcacg aatgtggatg gctctgagaa
      901 gctccctctg cttatcatcg ggaaaaaccg agccccacat tgtttcaaag gcgtaaaatc
      961 attgcctgtg tattacgaag ctaacagaac ggcgcggatg actgcagtta tattcgaaca
     1021 gtggatgcag aagctggatg aaaaattcca agcccagaaa cgaagagtgg tgatttttgt
     1081 ggattctctt ccggcacatc cagaagtgaa aaacctaaag tccattgagt tagcattctt
     1141 cccatcatgc ttgtcttccg ggtttgcagc tatgaatcaa ggtgttatta aaagccttaa
     1201 aatcaaatac cggcattgtc ttatcaagaa atttttaagc tcagttgaaa gtagcaaaga
     1261 gtttacattt tccctgctag atgcggttga tacattacat ctctgctgga gagctatagc
     1321 gccagagacc attgttaaat gctatgagga agcaggattc agctctccaa ggggagaaac
     1381 tgacacagca aatgcagaag aagatgctgc tgctcttgat ctgactgccc atgcagtggg
     1441 ggcaggagtg gaatttcttg aaggcttgtc catagaggga tacgctgctc tggatgagga
     1501 cctggagact tgtgaagacg ccccaaaaga tggtgctgag tgggacgaag aaagtaagca
     1561 agatgtaacc ggtttttata cttccgatga agaggaggag gacagcggag cgctagaagt
     1621 ggacctgcca ttaccatcca cgaatgaagc actcacagct ctaggcactc tgaaaaggtt
     1681 tcttagaagt cacgatatga acgatgaact tcacagttct ttagcagacc ttgaaaactt
     1741 tattaacact ttgtcgccta agtagcccct cagtgttcat ctgcagagca gtaacttttc
     1801 ctcgggtatc atattcccca aggaatgtaa acggaaagta tctcttaaac aagaaaagag
     1861 aaagcctaat aatcgttggc ttaactgcaa agcctttgat ctgcgtagcg ggggctccct
     1921 agtaaataat gactaagtaa aactgcaaaa ttccgtttag caggtttggg gagaaaatgt
     1981 gtttcagagg ctttatactt gaaagaaact tagcatgtgt gtgaaagaac tccagctggc
     2041 tgactcacac gcatgaaatt gctggttttc attttctttg ttttttttta agttcagata
     2101 atattctaga atattttatc ttcgtagtta aaaaaaaacc cagcttattt atttttataa
     2161 agtcatttgc atgctacctc tatcctaatg aattcttttg ttctctttcc tttttggttg
     2221 gtttttaaag aaagggtctc gctgtgtagt ccaaaatgcc tcaaattcag ggctatgctc
     2281 ctgcctcggc ctctcagatg ctgggattat aggtataaat cactatgcac agcctaatta
     2341 agcttttgag catcatctag tataaaatta tgttctaatt aatcttccag actgaaaaaa
     2401 ttattaaaat atattctaat ctgctatgca ccaagatgat gaacaatgta attcttgctg
     2461 ctttcaaatc acttgtcaaa ttaagtcaaa tgaaaagcta tcattttacc atccatcacc
     2521 aggtccttct gctgggcata tgtgtgtgct tgcttagtgg gaaaatactt gaagggaaat
     2581 gtttattaaa ctcatattta tattcgaata aggaggcaat tgaagactca cttagagtca
     2641 ccaagaagaa aacttgtggc acttttttac acatgatctt agccaaaagg ccgagaagcg
     2701 atgtggcgct tttttaaaaa ttgcaagagc tcaactttta atctagtttt gttcttgatt
     2761 ttactgaatt ttatttctta gcacattgtg gtatttagtt gtcttcctcc aatgttttct
     2821 tctctaaaag tttttagaga aagtgttacc tgtataatac attaacatac tgtaggaaat
     2881 tacctactca ccatctaaaa acagccgttg agcaaaattt taacaatgtg tcagtctttc
     2941 ccactgttca gttttaaata gcatgtttat ttaacttatt ctacctaatt taggtcccct
     3001 tgagaagtat tttataaaaa tacaaagcat aaggggttgg ggatttagct cagtggtaga
     3061 gcacttgctt agcaagtgca aggccctggg tttggtcccc agctccgaaa aaaaaaaaaa
     3121 gaaaaagaaa aaagaaaaga aaaaaataca aagcatagcg atttgttgtg aattattaat
     3181 ctgtcagaag attatacatt tagaagaaaa taatctaaca aaccattttt attttctatt
     3241 gttgtttgct ctgctctgag gatttagttg agccctaaac tgtattaata ttttagaagt
     3301 ttcctttatt attaaacatt gaatatttaa attaaaagca ttttgtgatt tga
//
