LOCUS       NM_001107573            1586 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus tigger transposable element derived 3 (Tigd3),
            mRNA.
ACCESSION   NM_001107573 XM_001071012 XM_219522
VERSION     NM_001107573.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473953.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_219522.3, XM_001071012.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132263 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..1586
                     /gene="Tigd3"
                     /note="tigger transposable element derived 3"
                     /db_xref="GeneID:309174"
                     /db_xref="RGD:1305393"
     exon            1..159
                     /gene="Tigd3"
                     /inference="alignment:Splign:2.1.0"
     exon            160..1586
                     /gene="Tigd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             174..1586
                     /gene="Tigd3"
                     /note="tigger transposable element derived 3 homolog"
                     /codon_start=1
                     /product="tigger transposable element-derived protein 3"
                     /protein_id="NP_001101043.1"
                     /db_xref="GeneID:309174"
                     /db_xref="RGD:1305393"
                     /translation="MELNTKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQ
                     ISRICKNKEKLLADWCSGTANHERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPML
                     LHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGTRQVLVPLLPPEPPPAVSPSQAQP
                     PLSLKDFSPEDVFGCAEVPLLYRAVPGRVFECDRLQVLLCANSRGTEKRRVFVGGLQP
                     APRCFFGVNSEALPASYHPDLAIPWSEWLAQFDQDMGQQGRQVALLLASGVVEEWASP
                     PGLHHVRLLPLSTSSTTPSLPGSVVLAFKAHYRHRLLSKLAAMQSGKEGTSRAEARAN
                     ITVLDALHMVAAAWAKVPRQLILTSFIQEGLAPGKTPLSLDKDTEMSPVPSGLSQEEF
                     SHFVDLEDEDPGPRVCKEETSTEDNGREEDGFESLPTKADALRALCTLRRWLECNSTS
                     PELFEKFYDCEVEVEQLCCL"
ORIGIN      
        1 cggtggcgcg cgctgggccc tgctttgcgc gcgcccgctc ccgagcagtc cctcggcgcg
       61 ctctgccctc agggtcgcgg cgcccgtccc tctctgattc tgtcaaggcc caggaaccta
      121 gctggggcag ggactggagc cgcgggacgg cacctggagg ctctcaggga gccatggagc
      181 taaacaccaa gaagaagctt cacgccctgt ccctggctga gaaaatccag gttctggaac
      241 tcttggatga gtccaagatg tcccagtcag aggtagcacg gcgcttccag gtctcacagc
      301 cccagatctc acgtatctgc aagaataagg agaagctgtt ggcagactgg tgcagtggca
      361 cagccaacca tgagcggaag cggaagcgtg aatccaaata cagtgggatc gatgaggctc
      421 tactctgctg gtaccacatt gcccgagcca aggcctggga tgtaacaggg cccatgttgc
      481 tccacaaggc caaggaacta gccgatatca tgggccagga tttcgtgccc agcattggct
      541 ggctggtccg ctggaaacgc cgaaacaatg tgggctttgg gactcgccag gtccttgtcc
      601 ctctgctccc tcctgaacct cctcctgcag tttccccctc tcaggcccag ccacctcttt
      661 ctcttaaaga cttctcacca gaagatgttt ttggctgtgc cgaagtaccc ttgttgtatc
      721 gagcagtgcc tggcagagtg tttgaatgtg atcggttgca agtattgctg tgcgccaaca
      781 gcagaggcac agaaaagaga agggtatttg tgggtgggct ccagcctgcc ccaagatgct
      841 tctttggggt caacagtgag gcactgcctg cctcttatca ccctgactta gccattccat
      901 ggtcagagtg gctggcacag ttcgaccagg acatgggaca gcagggccga caggtagcct
      961 tgctgttggc ttctggagtg gtagaggaat gggccagccc tcctggactc caccacgtgc
     1021 gactcctgcc tctctccacc tccagcacca ctccttccct gcctggctct gtggttttgg
     1081 cctttaaggc ccattaccgt caccgtctgc tgagcaaact agctgccatg cagagtggga
     1141 aagagggtac ctcacgtgct gaggccaggg ccaacatcac agttttggat gctctgcata
     1201 tggtggctgc agcttgggcc aaagtacctc gccagctcat tttgaccagc ttcattcaag
     1261 aagggctcgc tccgggcaaa acaccactgt ctctggacaa agatactgag atgtcaccgg
     1321 tccctagtgg gctgagccaa gaggagtttt ctcactttgt ggacctggag gatgaggacc
     1381 cagggcctag agtatgcaaa gaagagacca gtactgaaga caatgggaga gaagaagatg
     1441 gctttgagtc cctgcccacc aaagctgatg ccctgagggc actgtgcacc ttgaggaggt
     1501 ggcttgaatg caacagcacc tctccagaac tcttcgagaa attctatgac tgtgaggtgg
     1561 aggtggagca gctctgctgt ctgtga
//
