LOCUS       NM_001305180            2935 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus tigger transposable element derived 2 (Tigd2),
            mRNA.
ACCESSION   NM_001305180 XM_006236588
VERSION     NM_001305180.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2935)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jun 6, 2019 this sequence version replaced XM_006236588.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.11211.1,
                                           SRR26360181.668957.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-265               JAXUCZ010000004.1  89744516-89744780
            266-2935            JAXUCZ010000004.1  89744939-89747608
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2935
                     /gene="Tigd2"
                     /gene_synonym="RGD1559612"
                     /note="tigger transposable element derived 2"
                     /db_xref="GeneID:100912924"
                     /db_xref="RGD:1559612"
     exon            1..265
                     /gene="Tigd2"
                     /gene_synonym="RGD1559612"
                     /inference="alignment:Splign:2.1.0"
     exon            266..2935
                     /gene="Tigd2"
                     /gene_synonym="RGD1559612"
                     /inference="alignment:Splign:2.1.0"
     CDS             1047..2627
                     /gene="Tigd2"
                     /gene_synonym="RGD1559612"
                     /codon_start=1
                     /product="tigger transposable element-derived protein 2"
                     /protein_id="NP_001292109.1"
                     /db_xref="GeneID:100912924"
                     /db_xref="RGD:1559612"
                     /translation="MLGKRKRVVLTIKDKLDIIKKLEEGNSFKKLSVLYGIGESTVRD
                     IKKNKERIINYANNSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTNGIPVSGTIC
                     AKQARFFFDALGMEGDFNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAASEFCGNFQ
                     EFVKRENLLPEQIYGADQTGLFWKCLPTRTLAFDTDQSTCEYRTSRERIIIMCCANAT
                     GLHKLNLCVVGKAKRPRAFKGTDLSNLPVTYFSQKSAWIEPSVLKQWFEKCFVPQVQK
                     HLKSKGLREKAVLLLDFPAAHPAEELLNSDDGRIIVKYLPPNVTSLIQPMSQGVLTTV
                     KRYYRAGLIQKYMDEGNDPKLFWKNLTVLDAIYEASRAWNQIRSSTITRAWRKLFPGN
                     EENPSVSIDEGAILAANLATVLQNTEDCEHVNIENIGQWFDSRSSGSNCQVLADLVGA
                     ADRAKAGEQKQPSRKTRKAELNPEKHISHRAALEWTENLLDYLEQQDDMLLSDKLVLR
                     RLRTIIRRKQRIQTKSHL"
ORIGIN      
        1 cttccggctt ggccgcgcag ctccgttgcg cgctcactct gcggcggctg gcggggtcgg
       61 cttcgctggg gacttccatt gctggctctg ttttctggcc ggtcaggcag aacgatgccc
      121 gctccctgct tcccggcgtc ccgcgcgccc ggtgaccatt agcccgctgc agggttgtgg
      181 cggtgatccc ctgcctccga ctttcaccca gcgtccggct cggagcttgc tggccggcgg
      241 ggagaggccc tggtagtgtc aggaggtttc aaaggctcga gtacctctac agacccagca
      301 gctacttctg tggtcatgga gatcatcttc taccaggatt aatgtacgat cttcacccag
      361 cttatcaccc cctagttgca gcgttgggtc ctgatttcca ccaatgaagt ttttttatcc
      421 tttcttgaat catgtgacat tacttcttgt ccgctgtttc cctttcagtt gccaaatcca
      481 ttagctataa gttcttgttg atttaaagta ctgaattgtt tgcctgtccc cttacactga
      541 cagctcacct ctgctagcta tgactttcat aggtactcac caggagtcct tgccttgaat
      601 cgggcagaat cgacagagac aacaacagtc aggcagtgag tcgtcctgct ctgtttttct
      661 gtctgttaag tgtgcaagcc cgagtaaaac tgtattcttg aacatagcgt aagaaaaacg
      721 aaaaataatc ccgcggtaat ggcaaaagtt gatggtcatg agaatatttt agaaacctcg
      781 gtggcagggc agtattgatt cagcttccag taaggctgca attcaagaaa agagcaagga
      841 ggaagaagag aaaatagggt tcacttgagc tattccttgt tgtaggaaca ggttaagttc
      901 taaatgaaat gaaaaaatca gactttcttt gaaaattgtt ataccatcca agtcctaggg
      961 tacagctgag gactcttaag cctccatttt ctggtctctt tgtgttcaca tccaagttgt
     1021 taattgtcta aaataattag gctaaaatgt tgggaaaacg taaacgtgtg gtattgacaa
     1081 ttaaagacaa acttgacatt attaagaagc ttgaagaagg caactccttc aaaaaactct
     1141 ctgtcctgta tggaattggt gaatccacag ttcgtgacat taaaaaaaac aaagagagaa
     1201 ttataaacta tgccaacaat tcagatccta ctagtggggt atccaagcgt aagtctatga
     1261 agtcatcaac atatgaggag cttgacagag ttatgataga atggtttaat caacagaaaa
     1321 caaatgggat tccagtgtct ggaactattt gcgcaaagca ggctaggttc tttttcgatg
     1381 ccttgggtat ggaaggtgat tttaatgcct cttctggttg gcttactagg tttaagcagc
     1441 gtcatggtat tccaaaggct gctggtaaag gcacaaagtt aaaaggggat gaaactgctg
     1501 ccagtgaatt ttgtggtaac tttcaggaat ttgtgaaaag agaaaatctc ctaccagaac
     1561 aaatttatgg tgctgatcaa actggattgt tctggaaatg tctaccaaca aggacattgg
     1621 cttttgacac tgaccagagt acttgtgagt ataggacaag cagagaaaga atcattatta
     1681 tgtgttgtgc aaatgccaca ggtttacaca agcttaatct ttgtgtggtg ggaaaagcaa
     1741 aaagaccccg tgcgttcaaa ggaactgacc tttcaaacct tcctgttacg tacttcagtc
     1801 aaaaaagtgc gtggatcgag ccctctgttc tcaaacagtg gtttgagaag tgctttgtgc
     1861 cacaggtgca gaagcatctg aaatccaaag ggcttcgaga aaaggcagta ctacttttag
     1921 attttcctgc agcacatcct gccgaagaac tgttgaactc agatgatggc agaataattg
     1981 tgaaatattt gccgccaaat gtcacaagtc taattcaacc tatgagccaa ggagttctaa
     2041 ccactgtcaa aagatattac agagcaggac ttatccaaaa atacatggat gaaggaaatg
     2101 accctaaatt gttttggaag aatttgacag tgttggatgc aatttatgag gcatccagag
     2161 cctggaacca gataagatcg agtaccataa ccagagcgtg gagaaaactt ttccctggca
     2221 atgaggaaaa tccaagtgtg agcattgacg aaggagccat tttagcagct aatttagcaa
     2281 cggttttaca gaataccgaa gattgtgaac atgttaacat tgaaaatatt gggcagtggt
     2341 ttgactcccg gagtagtggc tccaactgtc aggtgttagc tgaccttgta ggtgctgcgg
     2401 accgggcaaa ggctggtgag caaaaacagc cctccaggaa gactcggaaa gcagaactga
     2461 atccagagaa gcatatcagc cacagagctg cacttgagtg gactgaaaat ttgctggatt
     2521 atctagaaca acaggatgac atgctactct ctgataagct ggtcttgcgg aggcttcgga
     2581 ccattataag aagaaaacag agaatacaaa ctaaaagtca tctatagtcc tctcttctgt
     2641 cgctgtgcat tttcatcttt gtgacttttg tctgcagtgg aatttaccta aagccaaata
     2701 aatgttacac atgactttag gattagatgc tgttctggat taattaaact acagctcttt
     2761 aatgttggtt ctgattgagc catgacatgg aattcacttg tcaatgtcta aactgtgtta
     2821 tactaattag atcctaatat actggcggct gggaggtggt gtgtgctgaa tgtcaacatg
     2881 tctagtgatg ggcagtgcac actgtaggcg ctcaataaat cttactcaaa ttgaa
//
