LOCUS       XM_039102465            1660 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TRAF-interacting protein with
            forkhead-associated domain (Tifa), transcript variant X4, mRNA.
ACCESSION   XM_039102465
VERSION     XM_039102465.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102465.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1660
                     /gene="Tifa"
                     /gene_synonym="Ab2-389; T2bp"
                     /note="TRAF-interacting protein with forkhead-associated
                     domain; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 52 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310877"
                     /db_xref="RGD:1359151"
     CDS             295..852
                     /gene="Tifa"
                     /gene_synonym="Ab2-389; T2bp"
                     /codon_start=1
                     /product="TRAF-interacting protein with FHA
                     domain-containing protein A isoform X1"
                     /protein_id="XP_038958393.1"
                     /db_xref="GeneID:310877"
                     /db_xref="RGD:1359151"
                     /translation="MSTFEDADTEETVTCLQMTIYHPGQLQSGIFKSIRFCSKEKFPS
                     IEVVKFGRNSNMCQYTFQDKQVSRVQFALQPFKQFNSSVLSFEIKNMSKKTSLMVDNQ
                     ELGYLNKMDLPYKCMLRFGEYQFLLQKEDGESVESFETQFILSPRPLLQENNWPTQSP
                     IPEDGVYSSYFTHRSSPAEMDENEL"
ORIGIN      
        1 tcaaaacgtg agaaacccta atagcatgcg tgaccaccac ccgggggagt cgtgccaact
       61 tccctttaaa ccgtttggac acctggctca ttttagtaaa aacatctctg ggaagcttct
      121 catctgtgac ctttgcaacc aatcagcctt gcgcaaaaac aaagccgggt agacccttca
      181 ctagtttcgt tggacacagg ggtcagagag gagcagcttg tccggagaag agacaaggcc
      241 caagagtcct gatctagctg tggccactgg aagactctca ggccggggag cgtcatgtcc
      301 acctttgaag acgctgatac agaagagacg gtcacttgtc tccagatgac catttaccat
      361 cctggccagc tgcaaagtgg aatatttaaa tcgataaggt tttgcagcaa ggagaaattc
      421 ccttccattg aagtggtgaa atttggacgg aattccaata tgtgccagta cacgtttcag
      481 gacaaacagg tttcccgagt tcagtttgct ttacagccgt ttaaacaatt caacagctcg
      541 gttctgtcgt ttgaaataaa aaacatgagc aagaagacga gtctgatggt ggacaaccag
      601 gagctcggct acctcaataa aatggacctg ccttacaagt gcatgctccg gttcggagag
      661 tatcagttcc tgctgcagaa ggaagatgga gagtcagtag aatcttttga gactcaattt
      721 atcttgtctc caagacctct cttgcaagaa aacaactggc caacgcagag ccccataccc
      781 gaggatgggg tgtattcttc ctacttcacc catagaagtt ctcctgcaga aatggatgaa
      841 aacgagctgt gaagagggtc cacccggaga cacgtgaagg atgaggacgc atgggtagac
      901 actcctgctt ccctggagtt cgtgagtgta gcataacaca gacgtccgcg tgctgacttc
      961 agttttggca gtggcatttg gaagtctgta cactgggtta gtcatcaact tagtcaactg
     1021 tttgagtttc ggctctagca agaattaagt gtgcggaggt ggcgcgtaag acacgccttc
     1081 cgcgtaatga cgtcactctc gttgcttctc tgcttgacgc cacccccacg ctatgtcttg
     1141 gtagcagcca tcttgtcctg gtcacgtcat ttcgcggcag cctttgtttt tcaagtttag
     1201 agcctgggca gattgttcgc tgctggtgtc ttcggcatgc tagtgcttgt agagccagag
     1261 tcctgggcta agctctagag tgctgagtcc ctgagtcact gtggctccat tatggaaaga
     1321 cttgagaaat agctccttgg ttttctttct atggaactgt catgtccatc cctaagacgg
     1381 cagctttgct ttcttatgtg taggcccttc agctaacatg taaagaacca aaatggtttt
     1441 ctcctgaagt cgaaagtgaa tttttttgta tcttaacaga tttagaaatg gcagaaatca
     1501 aaacggttta gcagcctctt cgcatatgat gaagtcggag ctcagttcct cagctgcttc
     1561 tttgaaactt cttaaaggga aacatctgtt cttaggccgc tctacagaag tcagtatatg
     1621 tgaatattta taataaatgc ttaactattt ctaaacgttt
//
