LOCUS       XM_017596709            4865 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TIR domain containing adaptor molecule
            1 (Ticam1), transcript variant X2, mRNA.
ACCESSION   XM_017596709
VERSION     XM_017596709.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596709.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596709.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4865
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4865
                     /gene="Ticam1"
                     /note="TIR domain containing adaptor molecule 1; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 6 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 198 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363328"
                     /db_xref="RGD:1590868"
     CDS             2040..4091
                     /gene="Ticam1"
                     /codon_start=1
                     /product="TIR domain-containing adapter molecule 1 isoform
                     X2"
                     /protein_id="XP_017452198.1"
                     /db_xref="GeneID:363328"
                     /db_xref="RGD:1590868"
                     /translation="MTNPAPSLHSVFGILSALERDRLTCLKHKLGSLHPGSLESKLLH
                     AMVLLALGQDTEARVSLESLKVNTAAQLVAGQWADMENTEDPEEPPDLSWTVARLYHL
                     LAEENLCPASTRDVAYQVALRDLTSQGDHQLGQLQKEAWDRCSSHQGSLQPPSAAPAM
                     TRSQPRPIDTSDWSWGHTLHSTGSTATLASHLEISQSPTLAFFSSHHGAHGPSKLCDK
                     PLGTQEPQLVPEGCEEPDRSQPPPVQTSISLGLPHEIRVPEVALPILPDSLAAPNTSV
                     HCPIECTEVSADSRSPLTSITESVGKQWPITSQRSPQFPVGDDVLPNSMSSSPPAQPP
                     SSQASSVQPPLSSASSQSSCPAPPASTPPVSEHLETSDQKFYNFVVIHARADEHVALR
                     IREKLETLGVPDGATFCEEFQVPGRGELHCLQDAIDHSGFMILLLTASFDCPLSLHQV
                     NHALMNSLTQSGRQDCVIPLLPLECSQAQLSPDTTRLLHSIVWLDEHSPIFARKVANT
                     FKAQKLQAQRERWKKEQEARTLKEQSTQLEAERQRVAAISAAYSAYVHGYTAWQTEMN
                     RLGVAFGKDLSLGPPTPFPSWPGFPKPMPSHPQGCTPVSPYSPRQPPSSSLSQSFSPA
                     SSPAPQTPGPQPLIIHHAQMVQLGVNNHMWGHTGAQSSDDKTEFGETLDGPSDRGEPL
                     S"
ORIGIN      
        1 gctttccctc ctccctgtga gatacggaga agaactagtg tgacaagctg aacctgccag
       61 actttcaatg tctgtccccc ttgacctcaa ggtcatccca actcagaggg tgggaacaag
      121 aagatcagga gttcaaggtc atccttggct acttagtaag tttgaaatta acctgggcca
      181 cactgacact gtgtctcaaa acagaaaaac ccagggcagg agagatggct ccagtggtaa
      241 agtgcttaga gttcttggct ttggggtgga agccaagaaa actcacttca gagacaaagc
      301 ttaaaaataa aagctttggg gttggggatt tagctcagtg gtagagcgct tgcctagcaa
      361 gcgcaaggcc ctgggttcgg tccccagctc cgaaataaat aaataaataa ataaataaat
      421 aaataaataa ataaataaat aaatgcaagc tttattttct gcactggcag gtaggtggcc
      481 aatttgggat ctgattccca aagagactac gcagaccttt ttataggaat gggaacacaa
      541 agcgaggggg agccggctgg gctgttagaa agaagttaat gtggatgact ggacttaatc
      601 ctggtcacct ggtttcaggg cccttgagtc agcttttaca accaggtccc ttcctggact
      661 ctggcctgga ctctagtgat aaaggacaaa ggagtggtga gcagatgtag ccggttaaga
      721 cgggaacaca tgtatgactt gtgtcttggt ttagacaaca ggataggcat ctccctcttc
      781 gtgtccttta ctgggtaaca aacacgaaat atctaaaaag caagttggat tctggggcct
      841 gggaacatgg agatggagga tgatggaact tgctcctgag atgactggac tcaggcagct
      901 gtctcctaat gatgtgacca agagaaaaca ttggatgtta acctccacaa agatgtacac
      961 atgtaaacac aaaaatggag aggccattct gatacctgat tgtgttcagt gatgcaaggc
     1021 agatactcct gactagaatc cccagcaaga gggtaggggt agctcatttg tgcagccacc
     1081 tcccagtcac agtcctctgt aaatagctgc ttttctgttt tcagaattta gcttcaccaa
     1141 tttttattta tttattatat ttaagtacac tgtagttgtc ttagacacac cgaaagaggg
     1201 tgcacaccag aagagggcat catttacaac tacagatggc tgtgagccac catgtggctg
     1261 gtgagatttg aactcaggac ctctggaagg gcagtcagtg ctcttaacca ctgagccatc
     1321 tctccagcct agcttcctta gttttaaaac atgcctgtaa tttcaccacc tagctgagaa
     1381 atactcacaa ctaaacagtt gtataagatc ttttggcctc cagcacttct gttcacttat
     1441 cttgtattaa tttatttttg agatggagct ctctctgtgt tggtcaggct ttcttcgaac
     1501 ttggggcaat ccacctgcct cagtttcctg tgtgctgctg gactgataag agtgagtcac
     1561 caggctccct gtgaacttag ccacgtggta ctttgcgaaa ccccagagta tgtcactagc
     1621 tgagctctgt ggctgccagc ttaacattct ctaggggtgg agggttcctt ccttcttccg
     1681 cagctctggc cccacagagt gcaagccctg cctagttcca cgtggcgcca gggcactggg
     1741 ccggagggca gggcctggct cagctagatg atgtgattac aggcgagact gctgacttca
     1801 tcctctcctc cccacaagac ccggaaggga ggaaggggtg gaaccgaact ctccctcctc
     1861 ctccagcagc taccagggac ctcgaaatct accagctcag gacccccaca gccaggtctg
     1921 cactgtcacc ctccaggatc cttgtggcag gggacaaggc tgtgcataag acaattggtt
     1981 cggaacatgt ctccatccac cccactctct gtggctccag gcttcatcct cccccatcca
     2041 tgaccaaccc agccccgtca ctccatagtg tctttggcat tctaagtgcc ttggaaaggg
     2101 acaggctgac ctgtctgaaa cacaagctgg ggagtctgca tccaggcagc ctggagtcaa
     2161 aacttctcca cgccatggta ctcctggctc tgggccagga cacggaggcc agggtctctc
     2221 tggagtcctt gaaggtaaat acagcagcgc agctggtagc tggccagtgg gcagacatgg
     2281 agaacacaga ggaccctgag gagcctccag acttgtcctg gacggtggct cgcctgtacc
     2341 acctgctggc tgaggagaac ctgtgcccgg cctccacaag ggatgtggct taccaggtgg
     2401 cccttcgtga cctcacctcc cagggtgacc accagctggg ccaactccag aaggaggcct
     2461 gggatcggtg tagttctcat cagggttccc tgcagccacc atcagctgcc cctgcaatga
     2521 ctagaagtca gcctcgcccc attgacacat cagactggag ttggggacat acgttacact
     2581 ccaccggcag cactgccaca ctggccagtc acctagagat cagccagtcg cccactctgg
     2641 cctttttctc ttcacaccat ggagcccatg ggcccagcaa gctatgcgac aaaccactgg
     2701 gcactcagga gcctcagctt gtccctgaag gctgcgaaga acctgacagg agccagcctc
     2761 caccagtgca gaccagtatc tctttggggt taccacacga aattagggtc ccagaggtgg
     2821 ctttgcccat cctccctgac tctctggctg ctccaaacac aagtgtccac tgtcccattg
     2881 aatgcacaga ggtgtctgca gactctaggt ctcccctgac atccatcaca gaaagtgttg
     2941 gaaagcagtg gcctatcaca agtcagaggt cacctcagtt tccagtagga gacgatgttc
     3001 tgccgaactc catgtcatcc agccctcctg cccagccacc gtcttcccaa gcctcctctg
     3061 tgcagccccc tctgtcctct gcttcctccc agagcagctg ccctgctccc ccagcctcca
     3121 caccccctgt ttcggaacac ttggaaacat ctgatcagaa attctataac tttgtggtca
     3181 tccatgccag ggctgatgaa catgtggccc tacgtattcg ggagaagcta gagacccttg
     3241 gggtacctga tggggccacc ttctgtgagg aatttcaggt gcctgggcgt ggtgagctgc
     3301 actgtctcca agatgccatc gatcactcag ggttcatgat cctgctcctg actgccagct
     3361 ttgattgtcc cctaagcctg catcaagtca accatgctct catgaacagc ctcacccagt
     3421 ctgggaggca ggactgtgtg atccccctcc tcccacttga gtgctcccag gctcagctca
     3481 gcccagacac aaccagactg ctccatagta ttgtgtggct ggatgagcac tccccaatct
     3541 ttgccagaaa ggtggcaaac accttcaaag cacagaagct ccaggcacag cgcgagcgct
     3601 ggaagaaaga gcaggaagcc agaaccctca aggagcagag cacacagctg gaggctgagc
     3661 ggcaaagggt ggctgccata tctgcagcct actcagccta tgtccatggc tacacagcct
     3721 ggcaaacaga aatgaacaga cttggggtgg cctttgggaa ggacttgtca ctggggcccc
     3781 caacaccttt ccccagctgg ccagggtttc cgaagccaat gccttcccat cctcagggtt
     3841 gtactccagt ttccccctat tctccgaggc agcctccgtc ctcttcccta tcccaatcct
     3901 tttcaccagc ctcctcccca gccccccaga ctccaggacc tcagcctcta attattcatc
     3961 atgcccagat ggtacagttg ggagttaaca accacatgtg gggccacaca ggggcccagt
     4021 catctgatga caagactgag tttggagaaa ccttggatgg gccctctgac cgaggggaac
     4081 ccctttcttg aaactccaga gtgaccaggt tggaccccac ctagattgcg agagtggcaa
     4141 gactgaactt cacttgggtt cttaaagtta tattagagga agggaacctt gcctgggccc
     4201 ccacagtggc cattagttgg tcccagtttg agaccccaga ggcagggaag accacacctg
     4261 taaatcaggg cttgggaaac gtgcagaacc cccatttgaa cagactctgt gggaccccaa
     4321 cctgcatcat ctctgtgaat agaggatgat ggggccatag gctcctgtga ggggtcctca
     4381 gtgtggccat gtaaccttca tatggtctct ctgggggggg gatgcggtgc tggggcacat
     4441 agggaaggtc ctgtttataa taaagttatt gacagctgag tcacaagcca acgcccccac
     4501 actccatcac cctcaggaaa caagcaggtc acgccaactt cgccatgact agaatagaaa
     4561 agggggtgta ccagcccagt ccttgagtgg caggaaccgg aaattatgta gatatactca
     4621 tcccattggt cagttcaggc tacgtagcct tctgttgcaa ggaattctag gaaatgtagt
     4681 ctggtggggg gggtgctgca gccattcatc aggaagtctt ataacttcaa gaaaggagga
     4741 gaaaaaaaac tgggagttgc tgccagtttt gattgttttg tcactgcgga tcatcttcct
     4801 tcatgctgat tcccctcccc aagacatgtc agactcttat acattaaaca aacaaacaaa
     4861 aacaa
//
