LOCUS       XM_039083031            3995 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Tia1 cytotoxic granule-associated RNA
            binding protein-like 1 (Tial1), transcript variant X2, mRNA.
ACCESSION   XM_039083031
VERSION     XM_039083031.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3995
                     /gene="Tial1"
                     /note="Tia1 cytotoxic granule-associated RNA binding
                     protein-like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 73 ESTs, 3 long
                     SRA reads, 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 121
                     samples with support for all annotated introns"
                     /db_xref="GeneID:361655"
                     /db_xref="RGD:1595845"
     CDS             215..1276
                     /gene="Tial1"
                     /codon_start=1
                     /product="nucleolysin TIAR isoform X2"
                     /protein_id="XP_038938959.1"
                     /db_xref="GeneID:361655"
                     /db_xref="RGD:1595845"
                     /translation="MITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALA
                     AMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS
                     DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS
                     TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK
                     GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQ
                     VYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPP
                     PVIPPPNQAGYGMASFPTQ"
ORIGIN      
        1 ctcccccttg tcccgggatc actccgtcgc acccaccatg atggaagacg acggacagcc
       61 ccggactcta cacacacaag ctaagacata tggttatctt cagaaaacaa tatggtgttt
      121 atagcctaga tacgtaggta acctctccag agatgtgaca gaagtcctta tccttcagtt
      181 attcagtcag atcggaccct gtaaaagctg taaaatgata acagagcaac ccgatagcag
      241 aagggtcaac tcttctgttg gattttctgt tttgcagcat acaagcaatg acccatattg
      301 ctttgtggaa ttttatgaac acagagatgc agctgctgca ttagctgcta tgaatgggag
      361 aaaaattttg ggaaaggagg tcaaagtaaa ctgggcaaca acaccaagta gccagaaaaa
      421 agacacttcc aatcacttcc atgtgtttgt tggggatttg agtccagaaa ttacaacaga
      481 agatatcaag tcagcatttg ccccctttgg taaaatatcg gatgcccggg tagttaaaga
      541 tatggcaact ggaaagtcca aaggctatgg ttttgtatct ttttataaca aactggatgc
      601 agagaatgca attgtgcata tggggggtca gtggttggga ggtcgacaaa tcagaaccaa
      661 ttgggccaca cgtaaaccac ctgcccctaa aagtacacaa gaaactaaca ctaagcagtt
      721 gagatttgaa gatgtagtaa accagtcaag tccaaaaaac tgcactgtgt actgtggggg
      781 gatcgcttcg gggctgacag atcaacttat gagacaaaca ttttcaccat ttggacaaat
      841 tatggagata agagtttttc cagagaaggg gtattcgttt gtcagatttt caactcatga
      901 aagtgcagcc catgctattg tttctgtgaa cggtactaca atcgaaggac atgtggttaa
      961 atgctattgg ggtaaagaat ctcctgatat gactaaaaac ttccaacagg ttgactacag
     1021 tcagtggggc caatggagcc aagtgtatgg aaacccacaa cagtacggac agtatatggc
     1081 aaatgggtgg caagtacctc cctatggagt atatgggcag ccatggaacc aacaaggatt
     1141 tggagtagat caatcacctt ctgctgcttg gatgggtgga tttggtgctc agcctccaca
     1201 aggacaagct ccgccccctg tcatacctcc tccaaaccaa gctgggtatg gaatggcaag
     1261 tttcccaaca cagtgagtga gctgggactc taaacacaag tgtaacccac cgcaggctgc
     1321 aggctcctgt gacactctga agacatgaag agtaaacatc gggaatgaaa atatttattt
     1381 taaaaattga aatgtttgga tcctttagca cagctttgct tggtgaagga cacgtgtctt
     1441 ctagttctgc ctttttaagt ttttttgttc atgatggata tgaacatgat ttttctttgt
     1501 gtacaaaaaa ctaaaataaa gtcaataaag acaattctga ctataaattt tgatataata
     1561 ggagaaatgg gtaatacact ttgatcctta gacacttccg tttttatctt gctgttcagt
     1621 attttaactc actgtgtttt taaaagagca aaaaagggag tatcgtgaaa aactgagaat
     1681 cacatcagtc tgtcctgaat tctgatactc ccctcccatc cctgaggtgg accacataga
     1741 agtcagcagg aaaaaagtgt gatttcagaa gaagtacatg atgtggggat cgctgtggaa
     1801 gaaatacctt atcctcttat gttaaaggaa acgaagccag actgaaagtg tgcagcctga
     1861 gtaaggacca gcatcttagg agttccttga gcgattgttg gtggtccaca ataagacata
     1921 tttttaaaac tttaaaagtg ttggttatca aaaatgtata ttacatttca ttttggggga
     1981 taattccaag tatggtgttt atattaaagt cagacggtca tacttgtgtt tttacatgga
     2041 gtttaaaaga taaacattgt aaatattgaa taactacagt gtttcaaaag catgcttcaa
     2101 catagaagta gcagcgatgt aattattcga ggtgacaagt aacatgctcg ctgagtgcaa
     2161 gtactcagta gcagcgtcga cactgacgtc tttagccgtg taaaatgaga acgacacaaa
     2221 tgactacaca gaagaagcct taatttaatt tcatacaaat ctttgatgca ttagtatatc
     2281 ctaaattgta agtggaagtt agatttgggc tttttttttt tctcccttct ttcccccccc
     2341 tttttttttt tttttttttt ttttttgttt gtttgtttgc tttttttgtt ttattttgtt
     2401 ttgttttgca ttatttggta cataccttga ttaaaaccca gtgaagtgac ttcagggttc
     2461 ctataagttg tatagcacaa attttttttt taaagaatct tgggatgttt ttaaaaatca
     2521 gtatattttg cccaagaatt ttttttaaca agattgctaa aaatatctta cttagacaac
     2581 ttgatgtacc agtttgtaat cttataacca tttgagttgt tcacaaagtt gtgactttta
     2641 tttcaaattt gttttttttc cccctttggg agtgtgtggg tgacagatct gaataggcct
     2701 gagttgtacg tgtgcagttg taattgagtc tttgggaaga tgcaggcgtt ccaggcatgc
     2761 tctcacagca tctttctgtc tatgtggata cagtctgcct catagttcta taaaatgaga
     2821 atgtgaaata gataaaatcc tatgtgtttc aattgtgaca gctagagggt gcaaatgttt
     2881 gatagtgtgt taaacctgtt ggcctgtgta tgcacaagag caaacagccc tactctaacc
     2941 gttctgaggt aagatgggta acacgcacct ggcgtccaca ctaagccatt gatgtctaaa
     3001 gattaagatg atgtggtttt ttatattggt gaccacaaag attctggtgt tgattccctc
     3061 cttcacttag aaatacagcc aaatgtgttc agcataaaaa tttacagagt ctgaagttct
     3121 tttttgagcc aaaattttta tgtaccttca tggttttgtt ttgttttgtt ttttaactca
     3181 caactaccct gtgttagtga ctaaatatac ccctggggtt tttttggtca tacctttggg
     3241 gaatgttttt ggaaaattat tttatacttt ataagaaaac aagctatatt ctgcccttga
     3301 gttaaaattt tcattaaact tggtgaaact cgaacaacct aaagacttta agttgataaa
     3361 ctgataaaag cttattaaat taaaatttca atttcccttt ttttccctct gccagtaaat
     3421 taagtggctt atcgagataa ctactggcta actttagctg tagtcttttc tgttttatat
     3481 tctgagttaa taaagttatc cagactagtt acattgtcat agtaagcatg tggctgacat
     3541 cttttgtctt aatttggatg ataaaacttt tcttggtaag tcagtcacag tttttcgcag
     3601 cagatagttt taagatggaa aggggcacat gcaagtgaaa gcaggtctgt gcagcacatg
     3661 tgagtctgtg cccttgaccg tctcacagtg cacatgtgag gagtctgtgc cctcgaccgt
     3721 ccactttaag cctaagagct gttgcctttt ctttcctgtg ttcgtcaaga acagcagaga
     3781 gactctttgg catgcaagga agtgtctctt catagtttct tgagatttat cttgctgtgt
     3841 ttctgcctgc catcgtctgt gcttgaaccc ttttctacta gcatttcctc ggtgccagtc
     3901 cgtctgatct ttatgtttgc cggcagtgag aggccaacta aagccaaagc tgtaaaccac
     3961 agttgaagtc tttcaataaa gacgagtcta tgtaa
//
