LOCUS       XM_006230310            4349 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Tia1 cytotoxic granule-associated RNA
            binding protein-like 1 (Tial1), transcript variant X1, mRNA.
ACCESSION   XM_006230310
VERSION     XM_006230310.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230310.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006230310.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4349
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4349
                     /gene="Tial1"
                     /note="Tia1 cytotoxic granule-associated RNA binding
                     protein-like 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 79 ESTs, 8 long
                     SRA reads, 21 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 231
                     samples with support for all annotated introns"
                     /db_xref="GeneID:361655"
                     /db_xref="RGD:1595845"
     CDS             503..1630
                     /gene="Tial1"
                     /codon_start=1
                     /product="nucleolysin TIAR isoform X1"
                     /protein_id="XP_006230372.1"
                     /db_xref="GeneID:361655"
                     /db_xref="RGD:1595845"
                     /translation="MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH
                     TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVG
                     DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG
                     QWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD
                     QLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK
                     ESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVD
                     QSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASFPTQ"
ORIGIN      
        1 gccactggag aagggcttcc cccactttcc cgggaccgca attcccagag acttgatttc
       61 gcggcttttc tctgttttgg atctgtcttg gagctggtta gggcttcgcc ggccagcaga
      121 accacagcga ctacgtggtc cgttgtgtcc agtcgtaggg tgtactcttt ggccaggctt
      181 tctgtctctt cagccacttt tgccggacag gccgtcgcag ctggcctgag cagtgacctg
      241 gcgggctgcg cctgcgccct gccgcgtttc ctgcctggct ggtggtggcg gccattttgt
      301 tcatcctcct cctcctcctg ctcctcctgg ttggagcgca gtgtccggag cgggctgggg
      361 ggagcgagcc caagagccgg gttcagtacc ttttcctctg tccccagccg gcgcccggag
      421 tccccctccc cttccttccc gccccctccc ctccccagcc ctgccctccc ccttgtcccg
      481 ggatcactcc gtcgcaccca ccatgatgga agacgacgga cagccccgga ctctatacgt
      541 aggtaacctc tccagagatg tgacagaagt ccttatcctt cagttattca gtcagatcgg
      601 accctgtaaa agctgtaaaa tgataacaga gcatacaagc aatgacccat attgctttgt
      661 ggaattttat gaacacagag atgcagctgc tgcattagct gctatgaatg ggagaaaaat
      721 tttgggaaag gaggtcaaag taaactgggc aacaacacca agtagccaga aaaaagacac
      781 ttccaatcac ttccatgtgt ttgttgggga tttgagtcca gaaattacaa cagaagatat
      841 caagtcagca tttgccccct ttggtaaaat atcggatgcc cgggtagtta aagatatggc
      901 aactggaaag tccaaaggct atggttttgt atctttttat aacaaactgg atgcagagaa
      961 tgcaattgtg catatggggg gtcagtggtt gggaggtcga caaatcagaa ccaattgggc
     1021 cacacgtaaa ccacctgccc ctaaaagtac acaagaaact aacactaagc agttgagatt
     1081 tgaagatgta gtaaaccagt caagtccaaa aaactgcact gtgtactgtg gggggatcgc
     1141 ttcggggctg acagatcaac ttatgagaca aacattttca ccatttggac aaattatgga
     1201 gataagagtt tttccagaga aggggtattc gtttgtcaga ttttcaactc atgaaagtgc
     1261 agcccatgct attgtttctg tgaacggtac tacaatcgaa ggacatgtgg ttaaatgcta
     1321 ttggggtaaa gaatctcctg atatgactaa aaacttccaa caggttgact acagtcagtg
     1381 gggccaatgg agccaagtgt atggaaaccc acaacagtac ggacagtata tggcaaatgg
     1441 gtggcaagta cctccctatg gagtatatgg gcagccatgg aaccaacaag gatttggagt
     1501 agatcaatca ccttctgctg cttggatggg tggatttggt gctcagcctc cacaaggaca
     1561 agctccgccc cctgtcatac ctcctccaaa ccaagctggg tatggaatgg caagtttccc
     1621 aacacagtga gtgagctggg actctaaaca caagtgtaac ccaccgcagg ctgcaggctc
     1681 ctgtgacact ctgaagacat gaagagtaaa catcgggaat gaaaatattt attttaaaaa
     1741 ttgaaatgtt tggatccttt agcacagctt tgcttggtga aggacacgtg tcttctagtt
     1801 ctgccttttt aagttttttt gttcatgatg gatatgaaca tgatttttct ttgtgtacaa
     1861 aaaactaaaa taaagtcaat aaagacaatt ctgactataa attttgatat aataggagaa
     1921 atgggtaata cactttgatc cttagacact tccgttttta tcttgctgtt cagtatttta
     1981 actcactgtg tttttaaaag agcaaaaaag ggagtatcgt gaaaaactga gaatcacatc
     2041 agtctgtcct gaattctgat actcccctcc catccctgag gtggaccaca tagaagtcag
     2101 caggaaaaaa gtgtgatttc agaagaagta catgatgtgg ggatcgctgt ggaagaaata
     2161 ccttatcctc ttatgttaaa ggaaacgaag ccagactgaa agtgtgcagc ctgagtaagg
     2221 accagcatct taggagttcc ttgagcgatt gttggtggtc cacaataaga catattttta
     2281 aaactttaaa agtgttggtt atcaaaaatg tatattacat ttcattttgg gggataattc
     2341 caagtatggt gtttatatta aagtcagacg gtcatacttg tgtttttaca tggagtttaa
     2401 aagataaaca ttgtaaatat tgaataacta cagtgtttca aaagcatgct tcaacataga
     2461 agtagcagcg atgtaattat tcgaggtgac aagtaacatg ctcgctgagt gcaagtactc
     2521 agtagcagcg tcgacactga cgtctttagc cgtgtaaaat gagaacgaca caaatgacta
     2581 cacagaagaa gccttaattt aatttcatac aaatctttga tgcattagta tatcctaaat
     2641 tgtaagtgga agttagattt gggctttttt tttttctccc ttctttcccc cccctttttt
     2701 tttttttttt tttttttttt gtttgtttgt ttgctttttt tgttttattt tgttttgttt
     2761 tgcattattt ggtacatacc ttgattaaaa cccagtgaag tgacttcagg gttcctataa
     2821 gttgtatagc acaaattttt tttttaaaga atcttgggat gtttttaaaa atcagtatat
     2881 tttgcccaag aatttttttt aacaagattg ctaaaaatat cttacttaga caacttgatg
     2941 taccagtttg taatcttata accatttgag ttgttcacaa agttgtgact tttatttcaa
     3001 atttgttttt tttccccctt tgggagtgtg tgggtgacag atctgaatag gcctgagttg
     3061 tacgtgtgca gttgtaattg agtctttggg aagatgcagg cgttccaggc atgctctcac
     3121 agcatctttc tgtctatgtg gatacagtct gcctcatagt tctataaaat gagaatgtga
     3181 aatagataaa atcctatgtg tttcaattgt gacagctaga gggtgcaaat gtttgatagt
     3241 gtgttaaacc tgttggcctg tgtatgcaca agagcaaaca gccctactct aaccgttctg
     3301 aggtaagatg ggtaacacgc acctggcgtc cacactaagc cattgatgtc taaagattaa
     3361 gatgatgtgg ttttttatat tggtgaccac aaagattctg gtgttgattc cctccttcac
     3421 ttagaaatac agccaaatgt gttcagcata aaaatttaca gagtctgaag ttcttttttg
     3481 agccaaaatt tttatgtacc ttcatggttt tgttttgttt tgttttttaa ctcacaacta
     3541 ccctgtgtta gtgactaaat atacccctgg ggtttttttg gtcatacctt tggggaatgt
     3601 ttttggaaaa ttattttata ctttataaga aaacaagcta tattctgccc ttgagttaaa
     3661 attttcatta aacttggtga aactcgaaca acctaaagac tttaagttga taaactgata
     3721 aaagcttatt aaattaaaat ttcaatttcc ctttttttcc ctctgccagt aaattaagtg
     3781 gcttatcgag ataactactg gctaacttta gctgtagtct tttctgtttt atattctgag
     3841 ttaataaagt tatccagact agttacattg tcatagtaag catgtggctg acatcttttg
     3901 tcttaatttg gatgataaaa cttttcttgg taagtcagtc acagtttttc gcagcagata
     3961 gttttaagat ggaaaggggc acatgcaagt gaaagcaggt ctgtgcagca catgtgagtc
     4021 tgtgcccttg accgtctcac agtgcacatg tgaggagtct gtgccctcga ccgtccactt
     4081 taagcctaag agctgttgcc ttttctttcc tgtgttcgtc aagaacagca gagagactct
     4141 ttggcatgca aggaagtgtc tcttcatagt ttcttgagat ttatcttgct gtgtttctgc
     4201 ctgccatcgt ctgtgcttga acccttttct actagcattt cctcggtgcc agtccgtctg
     4261 atctttatgt ttgccggcag tgagaggcca actaaagcca aagctgtaaa ccacagttga
     4321 agtctttcaa taaagacgag tctatgtaa
//
