LOCUS       XM_039107607            4566 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TIA1 cytotoxic granule-associated RNA
            binding protein (Tia1), transcript variant X8, mRNA.
ACCESSION   XM_039107607
VERSION     XM_039107607.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4566
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4566
                     /gene="Tia1"
                     /note="TIA1 cytotoxic granule-associated RNA binding
                     protein; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 40 ESTs, 4 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 110 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:312510"
                     /db_xref="RGD:1305742"
     CDS             707..1447
                     /gene="Tia1"
                     /codon_start=1
                     /product="cytotoxic granule associated RNA binding protein
                     TIA1 isoform X6"
                     /protein_id="XP_038963535.1"
                     /db_xref="GeneID:312510"
                     /db_xref="RGD:1305742"
                     /translation="MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR
                     KPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIME
                     IRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI
                     GYPPAYGQWGQWYGNAQQIGQYVPNGWQVPAYGMYGQPWSQQGFNQTQSSAPWMGPNY
                     SVPPPQGQNGGMLPNQPAGYRVAGYETQ"
ORIGIN      
        1 tgcgcatgcg cggcgcgggt cactcggctg tcggctccta agcgtccggc tcgccgccat
       61 cttggatcgg ggtttcattg ttcgcggtgg gacgggcatt tttgtgtaat cgctgccaaa
      121 gaagaaagcg aagtagcctc cagtcaagcg aggaggccgg ctcttccgca gccatagcca
      181 cctcaacgat ttgggaggta gcgaagggca gggagctgga ccctgaggtg ccgccgcgac
      241 tgcagcagcc atggaggacg agatgcccaa gactctatac gtcggtaacc tttctcgaga
      301 tgtgacagaa gctctcatcc tccagctctt tagccagatc ggaccttgta aaaactgcaa
      361 aatgattatg gatcagacgg caggaaatga cccgtactgt ttcgtggagt tccatgagca
      421 tcgccacgca gctgcagccc tggctgctat gaatgggcgg aagataatgg gtaaggaagt
      481 gaaagtgaat tgggcaacaa cccctagcag tcaaaagaaa gatacaagca atcatttcca
      541 tgtgtttgtt ggtgacctca gtccagaaat cacaactgaa gacatcaaag cagcttttgc
      601 accatttgga agaatttcag tgtctctgaa gaatggacag aattgccctg gctaactcca
      661 agctacggtt cacagtggat aaatagatgc ccgtgtggta aaagacatgg ctaccgggaa
      721 gtctaaggga tatggctttg tctccttttt caacaaatgg gatgcagaaa atgccattca
      781 gcagatgggt ggccagtggc ttggtggaag acaaatcaga actaactggg caacccgaaa
      841 gcctccagct ccaaagagta catatgagtc aaacaccaaa cagctgtcat acgatgaggt
      901 tgtgagtcag tctagtcccg gcaactgtac cgtgtactgt ggaggagtga cgtcaggact
      961 gacagaacaa ctaatgcgtc agactttttc tccatttgga caaataatgg aaatccgagt
     1021 ctttccagat aaagggtact cattcattcg gttcagttcc catgaaagtg cggcacatgc
     1081 aattgtttct gttaacggta ctaccattga agggcatgtg gtgaaatgtt actggggcaa
     1141 agagactctt gacatgataa accccgtgca gcagcaaaat caaattggat atccaccagc
     1201 atatggccag tggggccagt ggtatggaaa tgcacaacag attggccagt atgtacctaa
     1261 tggttggcaa gtacctgcct atggaatgta tggccagcca tggagccagc agggattcaa
     1321 tcagacccag tcttctgcac catggatggg acccaattac agtgtgccgc cacctcaagg
     1381 gcagaacggc ggcatgctgc ctaatcagcc tgctgggtat cgagtggcag ggtatgaaac
     1441 ccagtaaaaa cagacgacag aatggaagcc agtggcttga agccacaggg agggtaggaa
     1501 agccgatgtt tacttcaaga tttatcaaat cagtcagtac aaatgccaga tacaatgtat
     1561 ttatttaaaa gattcatttt taaaatcatg acattacttt tcatccacat tgttttaaaa
     1621 aggaacaaga tggtggatgt ctgccaattt ttgcttcatt atctttttga taaagtctct
     1681 cagatccttg tttctcagac aaatgcaggg cttgctgcca ctttgttaaa ataagaggca
     1741 gagaattgca caatggtgaa ttttttccac tgaaatagtg tgcagtttaa gtttgcattc
     1801 ctgatatgat ataaaacatg taatatagat gtaaaaaaaa agtcaaactt gtgcaaggtc
     1861 tagaagttct ttgtgacttt cagcgcgtgc acagttgtct taggttaaag ggtaggcatt
     1921 atgtgagcta taccatctcc actattatcc ctttggaatt tttaaatgta aattattagt
     1981 ttatatcatt ttgtatccac agttttttca caaattgtcc ggccttatga aaaaatctgt
     2041 aaaatactct taaatgaaaa aaatgatgtt cacttagatt gaaaactttt ctcagatgga
     2101 ctgataatta cattcatctt gtttttatat gagaaggtgc ctcaaggatt ccctgttgga
     2161 cttgtttaaa aggacttttt atcttctgtg ataacctttg ccatatacca ggaactagga
     2221 aaacaaggaa cttgttacta aagagaatct gcagtgataa gtcctcaccc acatgagctt
     2281 cgtgtgtcaa cgtctgtgtt tacatgtatg tttctaagat acttcagcaa gccacagttt
     2341 gcagttagca gactttgtct gtcatttcct tcctacaggt gtcatgaagc ggtgatgtac
     2401 gacagatttt acacttgcat gtgaatatca catacatact ttgatagtct ttgatacaaa
     2461 ctcatctgct cttgtttttc aagaattttg agacacaaag ttgtatgtat cagaatatat
     2521 taattagata ttttagttag atttacttaa gaagtgaatc cactttgata tgtacagatg
     2581 gtagctgtga aactgtggct gtccctctat caggcttggg gttcattaag acctctaaac
     2641 tagcctgaag ggccagccag gcaagacagt tttaaatatt cacaggccaa aatagaacaa
     2701 acaaataaac ccttaagtcc tacctcctta aacagccttc aaggaaatgc tcctgagcac
     2761 tgtgtggctt tggtccttca gtaccaggtc ccctggagct ctcacattac tatttttgag
     2821 gtttgctctc tgttggcatt gatctagcct tagggtttct aatatatttc agagtctctt
     2881 ggtttggtgt ggtttcagtg atgaccacaa ccttctcctt gacaggagag aggaaggagc
     2941 ccctgtgcat tgtgggtttt gagacctgcg gagagctccc agcattttac tcaggcctgt
     3001 ggaactggaa gcatttcctg gcctgtatct ttcaggtagg agcacacaac tctaacctgt
     3061 gtctaagcca gtccccttgt ccaacagccc aggaagacag tcccaatgtg tgcttctctg
     3121 gagctcagtt ctatgcagtt gtgctaatgt ttcattaagt cactgtgtat ttttaagtac
     3181 taaaacattg aaatttgctt tatggaagat gaataaattt tttaaatact tggaaatttt
     3241 atttctttgt aaacttcttc agattaggac aggcaataaa agcagcttaa ataaaatact
     3301 aaaagcaaaa agattaaaaa ctcacgcatg aggaagctat ttttagtttt ttctggattt
     3361 gtctcttatt ttagcatcct cagtatctct gtttaagact ttttcttctt ttgtaagttt
     3421 aggctgcagg atcttttggg cataagtagt ttattttgtg caaaagtgta gtttcttctt
     3481 ttgactctgt cgaggactaa ggacgtttat tagtagcata ttcttttttt tttttttttt
     3541 tttggttctt ttttttcgga gctggggact gaacccaggg ccttgcgctt cctaggtaag
     3601 cactctacca ctgagctaaa tccccagccc cttagtagca tattcttatt gcatatccta
     3661 cagtcacgtt gatttgctgt tgggagggta gtggtgctgt gttcctgatg aaggactgac
     3721 atttcaggaa catggctgtt gttagtttaa atgaatcatt taaatcattt ctcaacctga
     3781 aaaacttcat cctggtataa gaatcaggca aggaaatgaa ggtttttaaa gtcaacttcc
     3841 ctgcaatatg cattcaggtt ttactctctg gtactgtgaa gaacctgagt ggctcttggt
     3901 gggtcatgga gccagtattc tttatcctga ctgtttggat gttaaaattc ctctatgttt
     3961 tatatgacca gtggggtctt cttgcagtga ttattgtgtg tgagatcccc cacccaagtg
     4021 ttcatattac taactctcag gttcacctta tcccagaagc catggtctgc ataggttcca
     4081 gaggctctgc actctgcagc cttagctaac tgtgaagcca gagtttggtc ttcctggtga
     4141 aaacgagact cactgtctag cttatccttc tcttgtttta cccctgtgct catcttcctt
     4201 ttagattcgt gctagagttc catttcattt tcagaggact cgaatactcc acagaaggag
     4261 tagacagact cctaagggct atccatgcta ctgagattat agtctactta gatcaacaaa
     4321 atatattcat aggaaaattg aaaaagcaag acttttaaat gagcggtgat ttctaaaaat
     4381 tattttttat tggtgtagtg acctggttta tcaggtaaag gtgactgcca tcaaccaagc
     4441 ctgatgacct gagttgaaca cactcggtgg aagtagagaa ttaactctct caacaaacta
     4501 tcctcttccc tccacatgtg tgcaccctac cacggccaca tatataaata aatctttaaa
     4561 actgtt
//
