LOCUS       NM_001007661             956 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus thymocyte nuclear protein 1 (Thyn1), mRNA.
ACCESSION   NM_001007661 XM_217096
VERSION     NM_001007661.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Jiang,X.Z., Toyota,H., Yoshimoto,T., Takada,E., Asakura,H. and
            Mizuguchi,J.
  TITLE     Anti-IgM-induced down-regulation of nuclear Thy28 protein
            expression in Ramos B lymphoma cells
  JOURNAL   Apoptosis 8 (5), 509-519 (2003)
   PUBMED   14601557
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001007661.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC064031.1, SRR26643292.32871.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                JAXUCZ010000008.1  33665711-33665750
            41-185              JAXUCZ010000008.1  33665905-33666049
            186-367             JAXUCZ010000008.1  33670664-33670845
            368-436             JAXUCZ010000008.1  33672231-33672299
            437-529             JAXUCZ010000008.1  33672643-33672735
            530-625             JAXUCZ010000008.1  33673381-33673476
            626-776             JAXUCZ010000008.1  33674063-33674213
            777-956             JAXUCZ010000008.1  33674414-33674593
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..956
                     /gene="Thyn1"
                     /note="thymocyte nuclear protein 1"
                     /db_xref="GeneID:300470"
                     /db_xref="RGD:1359525"
     exon            1..40
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     exon            41..185
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..823
                     /gene="Thyn1"
                     /note="thymocyte protein thy28"
                     /codon_start=1
                     /product="thymocyte nuclear protein 1"
                     /protein_id="NP_001007662.1"
                     /db_xref="GeneID:300470"
                     /db_xref="RGD:1359525"
                     /translation="MPRPRKRQAGAAGPDKKQLSGKRTKTENSESASVKLENSSLEKT
                     TTFKTCGKNLSNYWLMKSEPESRLEKGIDMKFSIEDLQAQPKQTTCWDGVRNYQAWNF
                     LRAMKLEDEAFFYHSNCKQPGIVGLMKIVKEAYPDHTQFEKNDPHYDPSSKEDNPKWS
                     MVDVQFVRMMKRFISLDELKTYHQAHKATGGPLKSMTLFTRQRLSVQPLTQEEFDFIL
                     SLEEAEPS"
     exon            186..367
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     exon            368..436
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     exon            437..529
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     exon            530..625
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     exon            626..776
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
     exon            777..956
                     /gene="Thyn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttcaaggc tctctgaaga gtatccaggc agtacctcag gtcctttagg cttccttgcc
       61 tccatcttgc accgtgcagg ttttggaaga caagagctgc ttcttacacg tccggttagc
      121 ttcagcctcc tacagagagg caatgccgag accccggaag aggcaggctg gggccgctgg
      181 tccagacaag aagcagctat ctggaaaacg caccaaaact gaaaactcag aaagtgcatc
      241 agttaagcta gagaattcca gccttgagaa gactacaacc tttaaaacct gtggcaaaaa
      301 cttaagcaac tactggctga tgaagtcaga gccagaaagc cggctagaga aaggtataga
      361 catgaagttc agcatcgagg atctccaagc acagcccaag cagacaactt gctgggatgg
      421 tgttcgcaac tatcaggctt ggaacttcct cagggccatg aaactggagg atgaagcctt
      481 cttctaccat agcaactgca aacagccagg catcgtggga cttatgaaga ttgtaaagga
      541 ggcttaccca gatcatacac agtttgagaa aaatgacccc cattacgatc catccagcaa
      601 agaggacaac cctaaatggt caatggtgga tgtacagttt gttcggatga tgaagcgctt
      661 catctccctg gatgagctga aaacctatca ccaagcccac aaagcaactg gtggtccctt
      721 aaaaagcatg actctcttca cccgccagag actttcagtt cagcctctga ctcaagaaga
      781 atttgatttt attttgagcc tggaggaagc agaaccaagt taatcagaag gctctactaa
      841 tggatggagt gaccgcaccg agattttctg agacagcagg agaaagcttg ctgtttcaac
      901 tggggatcat atgcatgggt ggtttaattt tcccaataaa gatttaatga caaggc
//
