LOCUS       NM_001410276            1933 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus THUMP domain containing 2 (Thumpd2), transcript
            variant 3, mRNA.
ACCESSION   NM_001410276 XM_006239672
VERSION     NM_001410276.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Aug 2, 2022 this sequence version replaced XM_006239672.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.21862.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000006.1  19677060-19677197
            139-274             JAXUCZ010000006.1  19686655-19686790
            275-684             JAXUCZ010000006.1  19688034-19688443
            685-762             JAXUCZ010000006.1  19689254-19689331
            763-815             JAXUCZ010000006.1  19692595-19692647
            816-903             JAXUCZ010000006.1  19697684-19697771
            904-975             JAXUCZ010000006.1  19703969-19704040
            976-1090            JAXUCZ010000006.1  19704443-19704557
            1091-1199           JAXUCZ010000006.1  19723120-19723228
            1200-1310           JAXUCZ010000006.1  19726950-19727060
            1311-1933           JAXUCZ010000006.1  19728322-19728944
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..1933
                     /gene="Thumpd2"
                     /note="THUMP domain containing 2"
                     /db_xref="GeneID:313851"
                     /db_xref="RGD:1306878"
     exon            1..138
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..1773
                     /gene="Thumpd2"
                     /note="isoform 3 is encoded by transcript variant 3; THUMP
                     domain-containing protein 2"
                     /codon_start=1
                     /product="THUMP domain-containing protein 2 isoform 3"
                     /protein_id="NP_001397205.1"
                     /db_xref="GeneID:313851"
                     /db_xref="RGD:1306878"
                     /translation="MAAAGADPGSEPAGGAQFFCTAGRGLEPFLMREVRARLEATQVE
                     YISGKVFFTTCSDLPSMKKLKSAERLFLLIKKQLPITVSSLHRGRLLNEMQRFINDDP
                     GSWLKAISLWRKLLDHDTNGEKVSQGDANPLKRKAGENDSITPKKLKLEEMQVVDKSH
                     GESQQDQPQGPLEQGETLARTDELQEQRLHRASETAAHAQSPEDLTFRISCRCSGSIR
                     KVVTGQEAGRVAGLALMRQFGWKADLRKPDLEIFMHLSDAYSVVGIPLLRVPLASRTY
                     LQTAGLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYVGADVSDSQ
                     LLGACDNLKAAGLAHRIELLKGSVADLPLPAQSVDVIISDIPFGKKFKLGKDIKSILQ
                     EMERWPLWRKGTEYPAGEGDHPGCAVGIVKRCLPTEVAAEGVLHVDGVMILLLSEDHH
                     RRLTDCGGSSMPPTSQGNVSDPEMKMLLNPDRTGAPDTASPSQKASSLQSLGRPLPCG
                     SLVPVESFKVSLGKTDAFICKYKKASASGLSPSRCHEPGAHPEVAAMQGSPGLQDSIC
                     PGAPSAQPLPVGMAKNTAVR"
     exon            139..274
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            275..684
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            685..762
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            763..815
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            816..903
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            904..975
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1090
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1199
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1310
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1933
                     /gene="Thumpd2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcccgagca ccatggcggc ggccggggca gacccgggtt ctgaacccgc tggcggcgcc
       61 cagttcttct gcaccgcggg ccgcggcctg gagccgttct tgatgcggga ggtgcgcgcg
      121 cggctggagg ccacgcaggt tgaatatatt tcaggaaaag tgtttttcac tacctgttca
      181 gatttgccct cgatgaagaa gttaaagtca gcggaaagac tgtttttgtt gattaagaag
      241 cagcttccca ttacggtctc ctccctgcac agaggaagac tacttaatga aatgcaaaga
      301 tttataaacg atgacccagg aagctggctg aaggcgattt cactctggag aaaacttctc
      361 gaccatgata caaatggaga aaaggtttct caaggggatg ctaacccact aaaacggaaa
      421 gcaggagaaa atgacagtat cactcctaag aaattgaaat tagaggagat gcaagtggtt
      481 gacaagagtc acggggaaag ccagcaggac caaccacaag gcccactgga gcaaggggaa
      541 actctcgcta gaacggacga gctccaagag caaagactcc acagagcctc ggagacggcg
      601 gcgcatgctc agagcccgga ggacttgacc ttcaggattt cctgtcgctg cagcgggagt
      661 atcagaaagg ttgtcaccgg acaggaggca ggaagagtgg ctggactggc tctcatgagg
      721 cagtttggtt ggaaagctga tttgaggaag ccagacttag agatcttcat gcacctgagt
      781 gatgcctact ctgtggtggg gattcctctg ctcagagttc ccttagccag cagaacttac
      841 ctccagacag cggggctgcg gtcaaccata gcgtgggcta tggcatccat tgcagaaatt
      901 aaggcaggag ccctggtttt agatccaatg tgtggccttg ggactatact tgtggaagct
      961 gctgaagagt ggccagacgt attttacgtg ggtgctgatg tgagcgactc gcagttactt
     1021 ggcgcatgtg acaatctgaa ggccgcaggc cttgcacaca ggatcgagtt actcaaaggc
     1081 tctgtcgcag atttaccact gccagctcaa agtgtggacg ttattatttc tgacattcca
     1141 tttggaaaaa aatttaagtt gggaaaagac atcaaaagca ttctacaaga aatggaaagg
     1201 tggccgttgt ggagaaaggg gacagaatac ccggctggag agggagacca tcctggctgt
     1261 gctgtaggca tcgtcaagag atgcctgcct acagaggtgg cagcagaagg agtgctgcac
     1321 gttgatggag tcatgatctt gttgctcagt gaggatcacc accggcgtct tacagactgt
     1381 ggaggcagca gcatgccccc gacttcccag ggcaacgtct ctgaccctga gatgaagatg
     1441 cttttgaatc ctgacagaac tggtgcccca gacacagcat caccttcaca gaaagcaagc
     1501 agcttgcaaa gtctgggcag gccattgccc tgtggctcat tggtgccagt ggagtccttc
     1561 aaagtcagcc ttggcaaaac agatgctttc atatgtaagt ataagaaggc atccgcttcg
     1621 ggactgtccc catcccgatg ccatgagcca ggtgcacatc ctgaggtggc agccatgcaa
     1681 ggatcccctg gtctccagga ttccatatgc cccggagctc caagcgcaca gcctctaccg
     1741 gtgggcatgg ccaagaacac agcagtccga tgaggcgccc tgctttgtcc tctccagtat
     1801 tcagctctta aagaacagcg gattaagatg ttggaaagac ttgatgtaaa aagtacttct
     1861 tcccaaaagt ctgacttgag gaaaccttta tgtgtaactt ttttatatat taaacttcat
     1921 ctttttaaac cta
//
