LOCUS       NM_001009688            2710 bp    mRNA    linear   ROD 17-JUL-2023
DEFINITION  Rattus norvegicus THUMP domain containing 1 (Thumpd1), mRNA.
ACCESSION   NM_001009688 XM_219396
VERSION     NM_001009688.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087659.1.
            
            On Jan 13, 2005 this sequence version replaced XM_219396.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087659.1, FQ090337.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMN12840110
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..2710
                     /gene="Thumpd1"
                     /note="THUMP domain containing 1"
                     /db_xref="GeneID:309041"
                     /db_xref="RGD:1308854"
     exon            1..247
                     /gene="Thumpd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..1078
                     /gene="Thumpd1"
                     /codon_start=1
                     /product="THUMP domain-containing protein 1"
                     /protein_id="NP_001009688.1"
                     /db_xref="GeneID:309041"
                     /db_xref="RGD:1308854"
                     /translation="MAATAQQSPPSVGGKRKGKSQFLPAKRARRCDAGGPRQLEPGLQ
                     GILITCNMNERKCVEEAYSLLNEYGDDMYGPEKFIDKDQQPSGSEGEDDDAEAALKKE
                     VGDIKASTEKRLRRFQSVESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVIL
                     RMLPVSGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHMNREEVIKELA
                     GIVGSLNSENKVDLTNPEYTVVVEIIKAVCCLSVVKDYVLFRKYNLQEVVKSAKDSRP
                     PPKLGNGKEAQLEPGSKLSQNDPPKGKNNQQAAPESSEELGQTVPGSETQAGSEGGAK
                     PEPESQGSEGPKAKENELS"
     exon            248..422
                     /gene="Thumpd1"
                     /inference="alignment:Splign:2.1.0"
     exon            423..671
                     /gene="Thumpd1"
                     /inference="alignment:Splign:2.1.0"
     exon            672..2685
                     /gene="Thumpd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggattgta ggtagcatgg cggccacagc ccagcagtcc cctccgtcgg tcggcggaaa
       61 gcgcaaaggc aaatcccagt tcctgccggc caagcgggcc cgacgctgtg acgcaggcgg
      121 accgcggcag ctggagcccg gcttgcaggg catcctcatc acctgcaaca tgaacgagcg
      181 caagtgcgtg gaggaggcct acagcctgct caacgagtat ggcgacgaca tgtacggacc
      241 cgaaaagttt atagacaagg accagcagcc ctctggaagt gagggagaag atgatgatgc
      301 agaggctgcc ttgaaaaaag aagttggtga cattaaggct tctacagaga agaggctgag
      361 aagattccag tcagtggaga gcggagcaaa taatgtagtt ttcatcagga cacttgggat
      421 agaacctgag aaattagtgc atcatattct ccaggatatg tacaaaacca agaaaaagaa
      481 gacacgggtt attctgcgaa tgttacctgt ctcaggtaca tgtaaagcat ttttagaaga
      541 tatgaaaaaa tatgcagaaa catttctgga accctggttt aaagccccaa acaaagggac
      601 atttcagatt gtatacaaat ctcgaaataa cagccatatg aatagagaag aagtcattaa
      661 agagttggca ggaatagtag gcagcctcaa ttcagaaaac aaagtggatc tcactaatcc
      721 agaatacacg gtggtagtag aaatcatcaa agctgtgtgt tgcctgagtg ttgtgaaaga
      781 ttatgtgctg ttccgaaaat acaacctcca agaagtagtg aagagtgcaa aggactcacg
      841 gcctccccca aagctgggaa atggcaaaga agcacaactg gaacctggta gtaagttgag
      901 tcaaaatgat ccccccaaag ggaaaaacaa ccaacaggca gcaccggaga gtagcgagga
      961 gctggggcag acagtgccag ggtccgaaac ccaggcaggg agtgaaggag gagctaaacc
     1021 tgaacctgaa agtcaaggct cagaaggacc caaggcaaag gaaaatgagc tctcctaggt
     1081 cattctgcag gaggtggtct caactgtgga attgtgataa tgtattttga cttttgtgtg
     1141 ctactcaatg ctgatctcac aacccccctt gtcagttttg ttaaagccct tccaggcctg
     1201 tctgttggtg tgtgcagacc atgtactggt tcctagggga gggcaccagg aggatggatg
     1261 gtgttggcct ctgctcctca ttactctctc tagtttcctc ttgagcactg ccaactgatg
     1321 tggaactgaa caatatctga gtgggaaatg agcaggacac tgaggaaggt gtgttctaca
     1381 gctcagctgt ccctgccgtt ccattacaca cagaagtggc actgtggatt atgtgggaat
     1441 cgctttggga tgcttttttt gtttatgttt ttgggtttgt tttgttttgt ttatgttaag
     1501 agcaaatctg atggctcatt gctccaggtt ttttagagac ggtatgaggt agaacaggac
     1561 tgctctaggt gtagacccat gggtgcttat gataaggtta gggatgagga atcactgctg
     1621 ggtcacttcc atatcctagt acaaaaacag aaaagaaagc cactgtacca gggtttctct
     1681 ggacttggac tttctctgga ttgtcagctt gtggtgcttt caagttctcc tcacaggcag
     1741 agagagactg gaagggtaga cgggaccagt gactactgta aaacaaacta tccaggtggg
     1801 gcctctaaca ttaggctggg aaataggttt gtgcttgatt cttaatacat gttagaaaat
     1861 agtataaatg ctaagttggt taagtaaaga gctagtgaca tgagaggata tatttcctgt
     1921 cacagctaga ggcttgcttg gtaagacaga ccaagaggat atgggagaag caggagaata
     1981 ggcattacct tgctaatata gacggggcta gaccatcctt gggtgtttga catgttaact
     2041 caggtctgag attgaaacca tcttaaaagg atacgcctta gtatcactag ggggaacaga
     2101 tcacggtgcc ttcttgtagc ttgctctgag acagagggac ttttctttta atagactgtg
     2161 acaaagggcc tgaggataaa gtaccgtttg ctcagacagg aagttctgga acttggcaag
     2221 tcgctgcact tgagagtttg atgtatactt tgctgtgatt ggctttttat ttgtctccac
     2281 tgagtcccaa gtgtgactga ctatttgcca gttgtacagt gctatgctct taggatctaa
     2341 gttcccagct acttttgctc tgctttcaga ttggctgact ttgtcgtcac tgacttctca
     2401 gtgtgctatt tacaggtgat cgcagggtag gagcttactg gtcagtttaa accatagcaa
     2461 ttaagacaga aataaagacg cagaaaccaa atccctgtgc tgagggtcag catgctggtc
     2521 ctgctctgca gacaaaggag ttaagcctgg tcctgtagga cacatttgtc caaagctgaa
     2581 tacaggtttc agatatttct actgtatttc gttcttggta cagctggact ttcagctttt
     2641 caaagttact gatattttaa aaaataaaaa tgaatttgtt ctgtaaaaaa aaaaaaaaaa
     2701 aaaaaaaaaa
//
