LOCUS       XM_039082429            8584 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thrombospondin type 1 domain
            containing 4 (Thsd4), transcript variant X1, mRNA.
ACCESSION   XM_039082429
VERSION     XM_039082429.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082429.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8584
                     /gene="Thsd4"
                     /note="thrombospondin type 1 domain containing 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 40 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     28 samples with support for all annotated introns"
                     /db_xref="GeneID:315728"
                     /db_xref="RGD:1566296"
     CDS             280..3333
                     /gene="Thsd4"
                     /codon_start=1
                     /product="thrombospondin type-1 domain-containing protein
                     4 isoform X1"
                     /protein_id="XP_038938357.1"
                     /db_xref="GeneID:315728"
                     /db_xref="RGD:1566296"
                     /translation="MVSHLTSCLSALGALLLLGSQLVCPQPSTEHRKVPQRMAVAEGT
                     PEDSGGGSPGVWGSWGPWSACSRSCSGGVMEQTRPCLPSSYRAPAGSRPSGPTLSITG
                     HVVSAVRTSVPLHRSHEEQRTLAGSSASRQGPTVVRGSRHPQARSREPSERRSRTRGP
                     IGPGKYGYGKAPYILPLQTDTTHTPQRLRRQRPSSRPSRSQEASASKQGYRPPTHHFS
                     HNRPLYQSDSGPRSGLPPSEASIYQLPLTHDQNYPAASSLFHSPELSSNNGARPHGTS
                     QAFSQHLRSTAISCIGAYRQYKLCNTNACPDSGRSIREVQCASYNNKPFMGRFYEWEP
                     FAEVKGNRKCELNCQATGYRFYVRQAERVIDGTPCDQNGTAICVSGQCKSIGCDDFLG
                     SDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMHKSNNY
                     LALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILD
                     VYMIHQQPNPGVHYEYVIMGNNAISPQVPPHRRPGEPFNGQLETEDGGQEDREEREKN
                     QEKEDSHVEAPEVFTSESTQTFPVRHPERFPSHRPDNLVPPAPQHPRRNRDHNWKQLG
                     TTECSTTCGKGSQYPIFRCVHRNTHEEVPESYCDSSMKPTPEEEPCNLFPCPAFWDIG
                     EWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQT
                     RTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFL
                     TEWSERCSAECGAGVRTRSVVCMTNHISSLPLEGCGNNRPAEATPCDNGPCTGKVEWF
                     TGSWSQCSVECGSGTQQREVICVRKNADTFEVLDPYECSFLEKPPSQQACHLKPCGAK
                     WFSTEWSMCSKSCQGGFRVREVRCLSDDMTPGSLCDPQLKPEERESCNPQDCVPEVDE
                     NCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRHTGFLGSR"
ORIGIN      
        1 gcgcgggagg gcagggcgcg cggatcgcgc tctaggccct cagactccgc gcctgagcct
       61 tgcgctgggc actcgctggc cgcccgcgca cccgacacac cggggcgcag cgggagcccg
      121 tgcggggcgg gcggccgtcc atgcggcggc gctcgggaag cacgcggggc tgagaagtcg
      181 gccactctgg actagcccag gagttgaaca ccacttgaac ctgtagaaaa ctggggacac
      241 cttcgaggaa cccttgcctt atcctggacc tgcagcacca tggtttccca tcttacaagc
      301 tgtctcagtg ccctgggcgc cctcctgctg cttggttctc agcttgtctg cccgcagccc
      361 tccactgaac acagaaaggt cccacaacgg atggcagtgg ccgagggaac cccagaggat
      421 agtggtggcg gctccccagg tgtgtggggc tcctggggcc cctggtctgc ctgttcacgc
      481 agctgcagcg gtggtgtgat ggagcagaca cggccctgcc ttcccagctc ctaccgcgca
      541 ccagcaggct cccggcccag tggccctaca ctgtccatca ctggccacgt tgtgtcagct
      601 gtacggacct cagtaccact gcatcgaagc cacgaagagc agcgtaccct ggctggctcc
      661 agtgccagcc gccaaggccc cacggtggtg cgaggcagcc gacaccctca ggcccggagc
      721 cgtgaacctt cagagagaag gagcaggacc cgaggtccca ttggccctgg caagtatggc
      781 tatgggaagg ctccctacat cttaccactg cagacggata ccacacatac tccacagagg
      841 cttcggagac aaaggccttc atccagaccc tccaggtccc aggaggcatc tgcttctaag
      901 cagggctaca ggccaccaac ccaccacttc tctcacaaca gacctctcta ccagagtgac
      961 agtggccctc gttctggact gccaccttcc gaggcctcta tctaccagct gcccttgact
     1021 cacgatcaaa actaccctgc agcttcaagt ctcttccaca gcccggaatt gagcagcaac
     1081 aatggtgcta ggccccacgg gacatctcag gccttctctc agcatctgcg atcaacagca
     1141 atctcctgca tcggggccta tcggcagtac aaactgtgca acaccaatgc atgtccagac
     1201 agtggtagga gtatccggga ggtacagtgt gcgtcctaca acaacaagcc attcatgggc
     1261 cgcttttatg aatgggaacc gtttgcagaa gtaaagggta atcgaaaatg tgagctgaac
     1321 tgccaggcaa ccggctaccg cttctacgtc cgacaggctg agagggtcat tgacggcaca
     1381 ccctgtgacc agaacggcac ggcaatctgc gtgtcggggc agtgcaagag catcggctgt
     1441 gatgacttcc tgggatctga caaagtcgtg gacaagtgtg gggtgtgcgg cggtgataac
     1501 acgggctgcc aggtggtgtc aggcgtgttt aagcatgccc tcaccagcct gggctaccac
     1561 cgggttgtag agattcccca aggagccaca aaaattaaca ttacggaaat gcacaagagc
     1621 aacaactact tggccttgcg aagtcgctct ggccgctcca tcatcaatgg gaactgggca
     1681 atcgatcgcc ccgggaagta cgagggcgga gggacaatgt tcacctacaa gcgaccgaac
     1741 gagatctcca gcactgccgg ggagtccttt ttggctgaag gtcccactaa tgagatcctg
     1801 gatgtctata tgatacacca gcagcccaac ccaggagtcc actatgagta cgtgatcatg
     1861 gggaataatg ccatcagtcc acaggtgcca ccacacagga gaccgggaga acctttcaat
     1921 gggcagttgg aaacagaaga tggcggtcag gaggacagag aagagaggga gaagaaccag
     1981 gagaaggaag actcacacgt cgaggcccct gaagtattca catcagaatc cacgcagacc
     2041 ttcccagtca ggcatccgga gagattccct tcccaccgac cagataactt agtgcctcca
     2101 gcaccacagc accccaggcg aaaccgggac cacaactgga agcagctggg gacaacagaa
     2161 tgctccacca cctgtgggaa aggatcacag taccctatct tccgctgtgt gcacagaaac
     2221 acacacgagg aggttcccga gagctactgt gactccagca tgaagccgac cccagaggag
     2281 gagccctgca acctcttccc ctgcccagcc ttctgggaca tcggggagtg gtctgaatgc
     2341 agcaagacct gtggcctggg catgcagcac cgccaggtcc tgtgccgcca ggtgtatgcc
     2401 aaccgtagcc tgacggtgca accctaccgc tgccagcacc tggagaagcc agagaccacc
     2461 agcacctgcc agctcaagat ctgcagcgag tggcagactc ggactgactg gacctcgtgc
     2521 tcagtgccct gtggcgtggg acagaggacc cgggacgtaa agtgcgtgag caacattggg
     2581 gacgtagtgg acgacgagga gtgcaacatg aagctccgac caaatgacat cgaaaactgt
     2641 gacatgggac cctgtgcaaa gagctggttc ctcactgaat ggagcgaaag gtgctcagca
     2701 gagtgtgggg ctggggtgag gacacgctcg gtggtgtgta tgaccaacca catcagcagc
     2761 ctgccattag aaggctgtgg gaacaacagg ccagcggagg ctacaccatg tgacaatggg
     2821 ccctgcacag gcaaggtgga gtggttcact ggcagctgga gtcagtgttc cgtcgagtgt
     2881 ggcagtggga cacagcagag ggaggtgatc tgcgttagga agaatgcaga cacctttgaa
     2941 gtgctcgacc cttatgagtg ttcattcctg gagaagcccc caagccagca ggcctgtcac
     3001 ctcaagcctt gtggtgctaa gtggttcagc acagaatgga gcatgtgttc caagagctgt
     3061 cagggcggat tccgggtgcg ggaagttcgg tgtctctcag acgacatgac cccgggtagc
     3121 ctctgcgacc cccagttgaa gccagaagag agagaatctt gtaaccctca ggactgtgtc
     3181 cctgaagttg atgaaaactg caaggacaag tactacaact gcaatgtggt ggtccaggcg
     3241 cgcctctgtg tctacaacta ctacaagact gcctgctgcg cctcttgcac ccgagtggcc
     3301 aacagacaca caggctttct ggggagccga taacactcct gccctcctgg ggttacaagc
     3361 agtgctggct ggttgctgct ccgccgggga ccccacgctc accctcataa agcgtaccac
     3421 atggtaccca ggatgttaca aagccatggc tggccctttg agcattgccc tatcctgatg
     3481 atgcccttct ctggggcctg gcgcttgctg atggtgcctt ctgaaaatca agcatacagc
     3541 tctcatccca actccaggcc tgctgtcgac caagtgcagc ctccttcctg gtgttactgg
     3601 cctgcccaaa attagaaccc ctttggaaag tcaagagagg gcctcacccc accttacagc
     3661 accaagaaac cttgctgaga cctgtgtgtc cctgttaccc cagctcagcc gttatctgtt
     3721 gccattctta aggagactag acagctccct gccccagaac agaggtgtct cggcacagag
     3781 tgccttcttg ttgagcaggt acacaccttc tcagacatta gcttgctgga ggctgcagca
     3841 ccccagaacg ggaggcaggg ggtgaatatg ggctcccact ttactggcaa ggagactggg
     3901 gctctactca ggtaactgag ctgccgttta ggggccaggc ctaccccaga tggttgagca
     3961 cagccctcac ccccatagca cctccggtga ccctgggctc tgtccagagc ctacagtctg
     4021 aaggatgaat ggggcttcct ctctgaccag gaggctgaga agtttcccca agtgctttct
     4081 caaatgatca cttagttctt ccaagatgtc tgcacccatg tcccccttcc ctcagcttta
     4141 actcctgcta acaggactct ggtgttcact aagttccatt ttcaacagaa ctgtccctcg
     4201 aaatgagata gccacagaga gagctgctca gttgtcaggg attctctggg ccactctgga
     4261 gctggagcaa actcgcaact cccacaggcc cttgttccac tgtctctcct gggttcttca
     4321 tggtgccacc tagtgggaag ctaagccagt tatcccaaca ccatcatatt acattagaaa
     4381 gggtcttgtt tgagccccga ggactgacag aagtttctat ctagtggtct cacatctctc
     4441 ccctccactg tggctcttac ttcccacaag ccttgaccat caagatcaat tttaacgctg
     4501 caggtctggg agaaggagct aggaagccct ctgtgtctct gctgaggaac ttttgaccaa
     4561 ctataattcc agatgcccca ggcctgcggg aactcagtgt ttattgaaag gcaaaccatc
     4621 ttggggtgcc aggtatgggg agacaattaa gagaaatatt tttttcttaa aaactgtaaa
     4681 cttacagaaa tgaccttatt tcgggttctg ggcatgctcc cttaaagaga gtgcataccc
     4741 ttagcattgt gactgctcac agtgtcagga ttccagtggc cttggccttc tgtgaatatc
     4801 ctcccagcat cctcccatca tttgtctctt catggggagc ctggcattgc atccattaac
     4861 aagcagcccc acctctcctg tggggcagga ggtatagccc agcagagact gcacttggcc
     4921 tgctaggcac agagagaagt tcccttcctg tccctctcac tgcatgcttc tgcttgtccc
     4981 acgcagtttc ccctctacac agccattctc agatcttgct ggacgaggca gacatttgaa
     5041 ggattccttg gaagatgttt gtgcacatgc ccgatggtaa ggcatgcccg atctgtgggt
     5101 aaaatggagg ctggcattag ccccagggaa ggaaagtgtt ctagtaacca gagtcaccca
     5161 acagtgggcg gtcatgaggc ctgaaggact tctctccgga gaatgagcgc tctgctcctt
     5221 ccagttcaca aatcctcagg gctgggctgg gttggtgatg gctttgtctg tcttgtgtct
     5281 cagaagtcac ctcaacaatg atcgtcctgt agtggggtag gtcagagaga atggtcttct
     5341 ggcaaacaaa acaaaacaag caaacaaaca gaacccaaac aacaaaacta gaaaacgcct
     5401 cacctgagtt tggtttggtt tgttttttgt tttttgtttt ttggtttttt ttttgttttt
     5461 tgtttttttt ttttgttttt tcaggaaaat gagttgttcc caggagttca gttcctttta
     5521 gaaggttaca gattttagaa tggggtcaat ttaccagctt gtttagaagg ccaaccttgc
     5581 aaaggtcctg gttcctcctt ccatgccctg cacagtctcc tccttactcg atgtgggcag
     5641 tgaggccttg gactccccag tgatcaccag ggacagatgt ctgtgcctgc agatggttct
     5701 ttatccgcca cctccttctc aggcctctcc aattcccttc gttggctgtg atgtggaact
     5761 aaaatttata tttcaatatt gattttactc cgctgtgcca gatggccaca tcctgagctc
     5821 tggatgaaaa attttagata gattaaagct actatgtagc ctttctcaac aaaagtcaac
     5881 agagtcccaa atgaaaagtg tgtgctgtct tgctctcact ggaaaaaaac cttgctccag
     5941 gcctctgttg agtctctatt ttcctttgcc tcagggctgg ctgggaatat gctctctggc
     6001 cgctagaggg agctgttccc tgctggtagc cttgctcgga ctatcgagga gccaggggag
     6061 cttgtcagcc caggatttct gtttcacctt ctctctgtgc ttttagcatg cacccatcta
     6121 tttgttctct acacgtttat acacaacatt ctctttttaa aaggtagctt tctatagggc
     6181 caagaaacgg gagatgctag gtgaatttat tgtgtggtat ggagaaatct agatattgct
     6241 aatgcctgcc cagaaagcct cctcgtttta ctaatagctg tcttagcttt gacactatag
     6301 agttttccta tataaataga aggaataaaa taaaacagga tgacatcacg acaggatgga
     6361 tgatctgtca gccctgcagg tggaggccag attcttgcca gaaaaaaaca ttttgcttgt
     6421 agcttagata tcctagaaga aaattggctg atgccctgag cttggagagc caatagctag
     6481 agtaagaagg atctgaaaag atgtttttaa aatcccgaag agaaggtcag ttctgtggga
     6541 ggtggcgaaa gccctacctt tggattaaaa gaataattat atagttgaaa ggtgatagaa
     6601 agggaagaat ttcagctaag ctcagagtga gtcaaagcgt ggaaggagca ttagaatata
     6661 aaggacccct ggactaacga gttagctcag tcagcaaagc gctgaagaac ccagttcgag
     6721 tctcagaacc cagatgcaaa aagctgggtg tggcggtact cacttgtcat cccagcactg
     6781 gggaggcaga gacaggagga tgcctggggc tcactagctg accagcccag cctacttggc
     6841 aacttccagg ccagcaagaa aaaaatatgg tggatctcaa aaataaacat ggtggatggc
     6901 acctgtgtgt ataagccatt ccacaagcca ccaaggccac agagaaagca tgagtgagtt
     6961 gagctggtgt ctcagtagga ggactattgc tcacatgtaa tgttcagatg gggtttccca
     7021 atcctgataa agagggcagc ctgttggaga cagaggcgag ggacctctga ggtaggatat
     7081 cttcagaaga gacaccatga gagcctctca ggagtcggag ggagaaagcg cagcagaaca
     7141 ggttgctctt acagaataac aaactttccg caagccagaa ccactacggt gcagggatgc
     7201 tggagatagt aattcatcat agaagtggca gctgagacag gatggcagtg tgtcggaatg
     7261 tggaacagct ctgagtgact catctacatc gttcctaact cccactacct tgtcgccact
     7321 tgaaacccat tagcacccct tcctgttagc cgtgtgtgcc cttgtatcgc tggcaacctg
     7381 ggcagagcca tctccatgaa tctgctccac agaggggcaa actgacatgg ggctaaccgc
     7441 ctgccttgac tagcctgggc tatttacctc caatctcttt tgtaagaaca ccttgccttc
     7501 ctgagggacc ccttgctgac aaagagtagc cactccctac cccaaactgt cctttatact
     7561 ctgaatcctt gttctgttgt tgcactccgt gctgtgcaaa gtggccccaa gaatatagaa
     7621 actcccagcc tcatcagatg atcagccctg gcctcagtga gatgaaaatc ccttctgtta
     7681 cacccactaa ctcccacctt cctgggctgc ccagccccac accatctgcc cgacataagg
     7741 atatactttg ttataactta ttactttgtt ctctgtaaat acaagatgtt tataggaaat
     7801 tgtattctga gctataactg cagagtgaac tgcaacacca gaatagctct gttgtttaga
     7861 atacgttcgt tgtaaaggga cccaataggt atttatttac atatgccatc cacattcaca
     7921 gaaaacggtt tgattggccg agccagcttc ctggtacctg ctgcaccaca gtgtcttagt
     7981 ctacgccaat ccgtacagtt tatatagtga ttggccaaac ttttggggga ttaaaatcaa
     8041 atataactaa ctctgctttt gacatattca gggactcttc cccctggtat tgtgcctgac
     8101 taagcctgcc acctttctgt attaaataca tttcctcata tgatatgcct tctcctcaca
     8161 cccaaacact gtgggagaac ggaaggtgac tggtctttct tgtccctctc agtgtggcct
     8221 gccgttagct tcacctgcct catggctctg gtcagagctt ctgagatctt gggctgaggg
     8281 ggctgggcga ggcttggaga caggacacag caggttctta gctctgatgc taaccccagg
     8341 gctcctgttg gggactatgg gggccagggc ctcgaggctg atctgtgaac tgaagaacca
     8401 ggattgagaa acccctgagg acaccaccag ttctgtgtct cctctgcagg cttaagttat
     8461 tgtggaaggg ggaggcaagt agacgggtga attgtatgag caattatggg ctgatttcca
     8521 gcactatttt gtgtacaact aatttatttt tattgtaaaa atacaataaa ctggttaaaa
     8581 gatc
//
