LOCUS       XM_006248553            2476 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thrombopoietin like 1 (Thpol1),
            transcript variant X1, mRNA.
ACCESSION   XM_006248553
VERSION     XM_006248553.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248553.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006248553.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2476
                     /gene="Thpol1"
                     /gene_synonym="Thpo"
                     /note="thrombopoietin like 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:81811"
                     /db_xref="RGD:11455920"
     CDS             38..1462
                     /gene="Thpol1"
                     /gene_synonym="Thpo"
                     /codon_start=1
                     /product="thrombopoietin isoform X1"
                     /protein_id="XP_006248615.1"
                     /db_xref="GeneID:81811"
                     /db_xref="RGD:11455920"
                     /translation="MCPGHETAPAIQILSRACVGGGTGLHSPTMVQPWALGPVDRKRS
                     RHFRGLHQGLVALCSLIGRKWPGQASDPTTEEGLYPSQCLPTYLLPRVLPTVYLGPEA
                     LLHLDRFLGPPVPTPLCAEVQKLKPSPWPQERFRGEAPHREPLQSDTLGRMELTDLLL
                     VAILLLTARLTLSSPVPPACDPRLLNKLLRDSYLLHSRLSQCPDVNPLSIPVLLPAVD
                     FSLGEWKTQTEQSKAQDILGAVSLLLEGVMAARGQLEPSCLSSLLGQLSGQVRLLLGA
                     LQGLLGTQGRTTAHKDPSALFLSLQQLLRGKVRFLLLVEGPALCVRRTLPTTAVPSRT
                     SQLLTLNKFPNRTSGLLETNFSVVARTAGPGLLNRLQGFRAKIIPGQLNQTSGSLDQI
                     PGYLNGTHEPVNGTHGLFAGTSLQTLEAPDVVPGAFNKGSLPLNLQSGLPPIPSLAAD
                     GYTLFPPSPTFPTPGSPPQLPPVS"
ORIGIN      
        1 ccctttctcc tctctctcac ccgggcctca gggtctcatg tgcccaggac atgagacagc
       61 tcctgctatt cagatcctct ctagagcgtg tgtgggtgga gggaccgggc tccattcacc
      121 gaccatggtc cagccgtggg ctctaggccc ggtagatagg aaaagaagtc gtcatttccg
      181 gggccttcac cagggcttgg tggctctctg ctctctgatt gggcggaagt ggcctgggca
      241 ggctagtgac cctactacag aggaggggct gtaccccagc cagtgtcttc ctacctacct
      301 gctccccaga gtgctgccta ctgtgtacct gggtcctgaa gcccttcttc acctggatag
      361 attccttggc ccacctgtcc ccaccccact ctgtgcagag gtacaaaagc tcaagccgtc
      421 tccatggccc caggaaagat tcaggggaga ggccccacac agggagccac tgcagtcaga
      481 caccctgggc agaatggagc tgactgattt gctcctggtg gccatacttc tcctcaccgc
      541 aagactaact ctgtccagcc cagttcctcc cgcctgtgac cccagactcc taaataaact
      601 gcttcgtgac tcctacctcc ttcacagccg actgagtcag tgtcctgacg tcaacccttt
      661 gtctatccct gtcctgctgc ctgctgtgga ctttagcctg ggagaatgga aaacccagac
      721 ggaacagagc aaggcacagg acattctagg ggcagtgtcc cttctactgg agggggtgat
      781 ggcagcacga ggacagttgg aaccctcctg cctctcatcc ctcctgggac agctttctgg
      841 tcaggttcgc ctcctcttgg gagccctgca gggcctccta ggaacccagg gcaggaccac
      901 agctcacaag gaccccagtg ccctcttctt gagcttgcaa caactgcttc ggggaaaggt
      961 gcgcttcctg ctgctggtag aaggtcccgc cctctgtgtc agacggaccc ttcccaccac
     1021 agctgtccca agcagaacct ctcaactcct cacactaaac aagttcccaa acaggacttc
     1081 tggattgttg gagacgaact tcagtgttgt agccagaact gctggccctg gacttctgaa
     1141 caggcttcaa ggattcagag ccaagattat tcctggtcag ctaaatcaaa cctccgggtc
     1201 cttagaccaa atccctggat acctgaacgg gacacacgaa cctgtgaatg gaactcatgg
     1261 gctctttgct gggacctcac tacagaccct ggaagcccca gacgttgtgc caggagcttt
     1321 caacaaaggc tccttgccac tcaacctcca gagtggactt cctcctatcc caagccttgc
     1381 tgctgatgga tacacacttt tccctccttc acctaccttc cccacccctg ggtctccacc
     1441 ccagctcccc cccgtttcct gacccctcca ccaccatacc taactctacc aaccctcatc
     1501 caggacttgg tctcagtaag cgtcccgtgc actggcacgg agagcgatcg tctgcaacat
     1561 ctctcagggg caagcttcct caggaaggct ctgaggcagc tcactagaca tcctgctctc
     1621 gcctaacggg ccctgggaaa gggatacaca ggccaggaca ctgtacaacc ttaggagcga
     1681 tttttttctt aacctatcaa caatattcat cagagcagct atctttggtc tatttcctgt
     1741 acaaatttga aaatgacgaa ttctctacat gtgctttcat acactaagtc tgcaaatgcc
     1801 tagaccggtc tagcctttca acccaggtag agactaatac tgtatcagaa aacgaaaggg
     1861 aactcttctt tgctttcaag tttaagttcc ctcccaatgc cctcattccc ttcactgtga
     1921 ttcccagtga gaatgtttgg tcctcaagat actgctcttg ataaaggatt accaggttaa
     1981 tctctgagaa aggctgcccc tacttagaga caaaactgaa cctgtttgag aacgacagca
     2041 cccaaaagcc aattaaaaac caagggacca atgttcttca ctgggacaac agacctcccg
     2101 gaccctacct cccaagaaag ctaacaggaa gcttggggaa ctccacgccc caggtaagct
     2161 gtgcagatgg ttcagtaaag accagacttg gatgaggcag ctgagcaaac agctcagagt
     2221 atcagcagct cagcgggagc ttacgcaggc ctgggctcct gcttccctcc tgtggaggtc
     2281 aggcggaagt gcaggagtca ggctccgtag ctcacgcagc aggacaagca aagagcagtt
     2341 gaaggctctt tctagtttcc acaaatgcat ctaaaaggca gtcctgtgtg accaccagga
     2401 agtctactgg gaaccaccct cccctgcaaa tgaaggcaga gttacgggtt ttgcgagtaa
     2461 acgtgagtct ctgctt
//
