LOCUS       XM_017589835            2571 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus thymocyte selection associated
            (Themis), mRNA.
ACCESSION   XM_017589835
VERSION     XM_017589835.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017589835.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017589835.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2571
                     /gene="Themis"
                     /note="thymocyte selection associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:498985"
                     /db_xref="RGD:1560849"
     CDS             11..1801
                     /gene="Themis"
                     /codon_start=1
                     /product="protein THEMIS"
                     /protein_id="XP_017445324.2"
                     /db_xref="GeneID:498985"
                     /db_xref="RGD:1560849"
                     /translation="MFGNECCLSTGEVIKITDLKIKKIMAEICEGDIGGLESLKPFEL
                     PMNFPGLFKVMADKTPYLTMEEITRTINIGPSRLGHPCFYHLKDIKLENFTIKQGEPI
                     RFNSVEEINGETLVNCGVVRNQQSHSFTLPLSQEGEFYECEDEHIYTLKEIIEWKIPK
                     NRTRTVKLTDFSNKWDSTNPFPEDFYGTLTLKPVYEIQGVLKFQKEIVRILPSLDVEV
                     KDITDSYDASWFLQLLSTDDLFEMTSKEFPVVGEVIEVSQRNQLPQNILQPEKTIIIH
                     KKYQASRILASEIRSNFPKRHFLIPTSYKGKFKRRPREFPTAYDLQIAKSKKETLHVV
                     ATKAFHTLHKELSSVSVGDQFLVHHSETTEVVFEGTRKVNILSCERILSKSREAAQLP
                     LYMEGGFVEVIHDKKQYQISELCTQFCWPFNVKVAMRDLSIENDILAATPGLQLEEDI
                     TDSYLLISDFENPEECWEIPVGRLKMTVRLVNSSSLPTDAGPLQVRSLVEEITEEQYY
                     MIRRYESSVLHPPPRPPKHPSAEDMKLTLLSLAEERTINLPRSPKSHHIDRAKKLHPD
                     HCSMDSSVPGGFQNDLADVERRKNKHGPLQ"
ORIGIN      
        1 tgtttatgag atgtttggca atgagtgctg cctgtcgaca ggagaagtga ttaaaatcac
       61 agatctcaaa attaagaaga tcatggctga aatttgtgag ggtgatattg gaggtttgga
      121 gtctctgaag cccttcgagc tgcccatgaa ttttccaggt ctctttaagg tcatggctga
      181 taaaactcca tacctgacaa tggaagaaat cacaagaacc attaatattg gacccagtag
      241 actaggtcat ccttgctttt atcacctgaa ggatataaaa ctagagaatt tcactattaa
      301 gcagggtgag ccaatccgct tcaactcggt tgaagagatt aatggagaaa cactggtgaa
      361 ttgtggtgtg gtaaggaatc aacagagcca ctcatttact ttgccattgt cacaagaagg
      421 agaattttat gagtgtgaag atgagcatat ctatacccta aaagaaatca ttgaatggaa
      481 gattcccaaa aacagaactc gaacagtaaa acttacagat ttctcaaata agtgggactc
      541 aactaatcca ttcccagaag acttttatgg tacattgact ctcaagcctg tttatgaaat
      601 ccaaggtgta ctgaaatttc aaaaggaaat agtccggatt ctccccagtt tagacgttga
      661 agtcaaagac attactgact cttatgatgc tagctggttt cttcagttgc tgtctacaga
      721 cgatcttttt gaaatgacca gcaaagagtt tcctgtagta ggtgaagtca tcgaagtatc
      781 tcagaggaac caactgcccc aaaatatttt acagcctgag aaaaccatta tcatccacaa
      841 aaagtaccag gcttcaagaa tcttagcttc agaaattcgc agcaatttcc ctaaaagaca
      901 cttcttgatc cctactagct acaaaggcaa gttcaaaaga agacccaggg agttcccaac
      961 ggcctatgac ctgcagatag ctaagagcaa gaaagaaact ctccacgtgg tggccaccaa
     1021 agcttttcat acacttcata aggagctatc ctctgtgtct gttggagacc aatttctagt
     1081 gcatcattcc gagactacag aagttgtctt tgaaggaaca agaaaagtaa acattctttc
     1141 ctgtgaaaga atcctcagta agtcccgtga agcagcacag cttcctctgt atatggaagg
     1201 aggttttgta gaggtgattc acgataagaa acagtaccag atttctgagc tctgcacaca
     1261 gttctgctgg cccttcaatg tgaaggtggc tatgagagat ctctccattg aaaacgacat
     1321 tttggcagca actccgggac tgcagttgga ggaggacatc acagattctt acctacttat
     1381 cagtgacttt gaaaatcccg aggaatgttg ggaaattccc gtgggccgct tgaaaatgac
     1441 tgttcggtta gttaatagta gtagtttgcc tacggatgca ggaccacttc aagttaggag
     1501 tcttgtagaa gagattaccg aggaacagta ttacatgata aggagatacg aaagctcagt
     1561 attacatccc ccgcctcgcc ctcccaaaca cccctcagct gaggatatga agctaacctt
     1621 gttgagctta gcagaagaga gaacgataaa tctgcccagg tctcccaaga gtcaccacat
     1681 agacagagcc aagaagctcc acccagatca ctgtagcatg gattcaagcg taccaggtgg
     1741 ttttcagaac gatttggctg atgtggagag acggaagaac aaacatgggc cactgcagta
     1801 gcaagcactg atgtgcctac agaactcttc aaaactgaaa aacttcaaat gtaacaagat
     1861 gtgacggaac ccacttgggc agtgaacata aatgttgcag tggagaagga agtctcgctg
     1921 aaaaacaatg attccccaat ggactctgga agaatctgga tcagctactg caaagacaaa
     1981 aacaagctta aatgttttaa cacataaatc tcaaagagag acccatgatg tggaatttaa
     2041 attgtctact tggtttccta aaacccacaa gtattgtttt cctgttgttt aagacatatt
     2101 tattttaatg tgcatctttt tattgagtag gatcctattt ttaagtctaa accctcacta
     2161 agtttttgcc ctttttttct agcagttttc cttcccattt ttttccagat tcatcatcat
     2221 ttctgctaag acccaataag gaaaattaat tgtgtttgac agtgacttaa aatggccaag
     2281 tttctactct gattccctga gaactgtgag aatgagtttg attttgcatt ttcaatgtgt
     2341 tttatgaata cactgtgagc atcaactctc aacagccagc cccattatga gtcacagaac
     2401 cttctctaac ttccttcctc cacttctaaa agggcgagtt gttgaccaaa gaatcacttt
     2461 gtattttacg tactgtaatt ttgatcatgc ttcttttttt aattggatat ttttatttac
     2521 atttcaaatg ttatcccctt tcccaatttc ctgatataaa acccttatcc c
//
