LOCUS       XM_006247854            1803 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus threonine aldolase 1 (Tha1),
            transcript variant X4, mRNA.
ACCESSION   XM_006247854
VERSION     XM_006247854.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 8, 2024 this sequence was replaced by
            NM_001430275.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006247854.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1803
                     /gene="Tha1"
                     /note="threonine aldolase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 41
                     long SRA reads, 1 Protein"
                     /db_xref="GeneID:688286"
                     /db_xref="RGD:1591140"
     CDS             128..1303
                     /gene="Tha1"
                     /codon_start=1
                     /product="uncharacterized protein Tha1 isoform X4"
                     /protein_id="XP_006247916.1"
                     /db_xref="GeneID:688286"
                     /db_xref="RGD:1591140"
                     /translation="MLRSLARAAVPGLRVPWAQWSRNWAGVPAHVVDLRSDTVTRPGP
                     AMRRAMAEAVVGDDDYGEDPTVHELQEKAAKVLGVERTLFVPTNTMANLISVMGHCRR
                     RGSQVLLGQECHLHVYEQGGVAQIAGVHSHPLPDLPHGTLDLNELERALARGFGSSYH
                     PVCELVCLENTHSSAGGRVLSIDYLRQVRLLAHAHGARVHLDGARLMNAAVALRVPPA
                     RLVEHCDSVSFCFSKGLGAPVGALVGGPKDFIEEAWRLRKALGGGMRQAGVLAAAALV
                     GLAEAEEVLLRDHENAQRFAKGLQDLASPICSVDPATVETNMVLVRVAGLPPSELCQH
                     LQAVSAEEVAQTGHAVRVLLFPWTEQSVRAVWHRDVSAQDMELALKKWEFVLRQLRP"
     polyA_site      1803
                     /gene="Tha1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ccatagtgct ccgggccttc ccagtacagg tctgctccgg gtcagaagag tccagctgca
       61 cggttccccg ctggcacgga agagacgtcc acggagcctg cgggcgcgga aagcgagtgc
      121 catagccatg ctacgcagcc tggcccgggc cgcggtcccg gggctcaggg tgccctgggc
      181 tcagtggtct aggaattggg cgggggtccc agcccacgtg gtggacctgc gcagcgacac
      241 ggtgactcgg ccagggccgg ccatgaggcg cgctatggcc gaagcggttg taggagacga
      301 tgattacggc gaagacccta cggtccacga actgcaggaa aaggctgcaa aagtgcttgg
      361 ggtggagagg actctgtttg tgcccaccaa caccatggcc aacctcatct ctgtgatggg
      421 tcactgccgg cgccggggtt cccaggtcct ccttgggcag gagtgccacc tccacgtcta
      481 tgagcagggc ggggtggctc agatcgctgg ggtgcattcc caccccctcc cagacctccc
      541 tcacggcacc ttggacctga atgagctaga gagggcgctc gcccgaggct ttgggagctc
      601 ctaccatcca gtctgcgagc ttgtgtgcct ggagaacacg cacagcagcg cgggaggccg
      661 ggtgctctcc atcgactacc tccgccaggt gcgtctcctg gctcatgccc acggggcgag
      721 ggtccacctg gatggggctc ggttgatgaa tgcagccgtg gctctgcgtg tgccccccgc
      781 acgcctcgta gagcactgtg actccgtatc cttctgtttc tctaagggcc tcggtgcacc
      841 agtgggggct ctggttgggg gacccaagga cttcattgaa gaagcatggc gcctccgcaa
      901 ggccctgggt ggaggcatgc gccaggcagg agtgctggct gcggctgccc tggtgggact
      961 ggctgaggca gaggaggtgc tgctgaggga ccatgagaat gcccagagat ttgctaaagg
     1021 actccaagac ctggcgtcac ccatttgctc tgtggatcct gccactgtgg agaccaacat
     1081 ggtgctggtg cgggtggctg ggctgcctcc ctcagagctg tgccagcatc tacaggctgt
     1141 gagtgccgag gaagtggctc agaccggcca tgccgtgcgc gtgctgctgt ttccctggac
     1201 agaacagtct gtgagggccg tgtggcaccg agatgtgtct gcccaggata tggaactggc
     1261 actgaagaag tgggagtttg tgctgagaca gctgaggccc tgagaccagg ggatcaggga
     1321 ccaggtgcta tgtttgaagt gggcagtgac aggcctcaag ctgttagcct gatgaaggaa
     1381 ggctcctcct ctttggaggc tgatgacatc actcagcctc tggtttgctc cagtgactct
     1441 ccggtgctgg cctcatgcag tcaggaataa tcaggcagag ctataaccag gcagagctag
     1501 gactgaatat ccagaggagg aagtggataa aggagacagg tcctggggct gggcggtatg
     1561 gcatggccac ctagtgtgca taagccctgg gctcaacccc cagcactgtg ggttccatcc
     1621 ccagcaggtg tgttggaatc ctagtgtgcc tggggattag acattcaagg ccattttcag
     1681 ctacacagtt tggtgcaagc ctgggctaca cgggaccctg tcttcaagca aacagctcct
     1741 tagtgattga catggtggaa ttattagagg tggattacaa aataaaatat tgaaggcact
     1801 gta
//
