LOCUS       XM_039106586            3094 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transglutaminase 6 (Tgm6), mRNA.
ACCESSION   XM_039106586
VERSION     XM_039106586.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3094
                     /gene="Tgm6"
                     /note="transglutaminase 6; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     Proteins, and 60% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:296152"
                     /db_xref="RGD:1565348"
     CDS             1..2154
                     /gene="Tgm6"
                     /codon_start=1
                     /product="protein-glutamine gamma-glutamyltransferase 6"
                     /protein_id="XP_038962514.1"
                     /db_xref="GeneID:296152"
                     /db_xref="RGD:1565348"
                     /translation="MALISRAPEWQPGGVRITKVDWQHSENGAAHHTQDYPCPELVVR
                     RGQLFSLTLDLNRALDSEEALIFTVETGPHASEALHTKAIFQTAELEIGDTWTAAKEE
                     QTENTITVSLSSPSNAVIGRYLLSARAASRRKHSDRKLGQFILLFNPWCPEDDVFLDS
                     EEERQEYVLNDSGIIFRGVEKHIRAQGWNYGQFEEDILNICLSILDRSPSHQDDPATD
                     VSHRHDPVYVTRIISAMVNSNNDRGVVQGQWQGKYGGGTNPLNWRGSVAILQKWFKGK
                     YKPVKYGQCWVFAGVMCTVLRCLGIATRVVSNFNSAHDTDGNLSVDKYVDSYGRTLED
                     LTEDSMWNFHVWNESWFARQDLGSSYDGWQVLDATPQEESEGTFQCGPASVTAIREGD
                     VHLAHDGPFVFAEVNADYITWLWHEDKRRERVYSDTKKIGRCISTKAVGSDSRVDITG
                     LYKYPEGSRKERQVYGKALKKLLSVEAWGRRRRIRRASVRGIWRDDLLEPVTKPSITG
                     KFKVLEPPVLGQDLKLALCLTNLTTRAQRVRVNVSGATILYTRKPVAEILRESHTMKL
                     GPLEEKRIPVTISYSQYKEDLTEDKKILLAAMCLVSKGEKLLVEKDITLEDFITIKVL
                     GPAVVGVTVAVEVLVINPLSESVKDCVLMVEGSGLLQGQLSVEVPSLKPQERALIQFN
                     ITPSKSGPRQLQVDLVSSQFPDIKGFVIIHVATAK"
ORIGIN      
        1 atggcattaa ttagccgagc accggagtgg cagccaggag gggtcagaat caccaaggtg
       61 gactggcagc attcagaaaa tggtgctgcc caccacaccc aagactaccc ttgccctgag
      121 ctggtggttc gaaggggcca gttattcagt ctgaccctgg atctgaatag agccctggac
      181 agcgaggagg ccctcatctt caccgtggag acaggacccc acgcatctga ggctctccac
      241 accaaagcca tattccagac agcagagcta gaaatagggg acacctggac agctgcaaag
      301 gaggaacaga cagagaatac aatcaccgtc agcctctcca gcccttccaa tgcagtcatt
      361 ggccggtacc tgctgagtgc cagggccgct tcccgcagga aacacagtga ccgaaagctg
      421 ggccagttca ttctcctgtt caatccctgg tgcccagagg atgatgtgtt tctggactca
      481 gaggaggaga ggcaggagta cgtgcttaac gacagtggca tcatcttccg aggcgtggag
      541 aagcacatcc gagcccaggg ctggaactac gggcagtttg aagaggacat cctgaacatc
      601 tgcctctcca tcctggaccg aagtcccagt caccaggatg acccagccac cgacgtgtcc
      661 caccgccatg acccggtcta cgtcaccagg atcatcagtg ccatggtgaa cagcaacaat
      721 gaccgtggtg tggtacaagg ccagtggcag ggcaaatatg gcggtggcac caacccactg
      781 aactggcgtg gcagtgtggc catcctgcag aagtggttca agggcaagta caagccagtt
      841 aaatatggtc agtgctgggt cttcgctggc gtcatgtgca cagtcctcag gtgcctgggg
      901 atcgcaacca gggtggtgtc caacttcaac tcagcccacg acaccgatgg caatctgagt
      961 gtggacaaat atgtggactc ttatggccga accctggagg acctgacaga agacagcatg
     1021 tggaattttc acgtctggaa cgagagctgg tttgcacgac aggacctggg ttcatcctat
     1081 gatggctggc aggttctgga tgccacgccc caagaggaga gcgaaggtac gttccagtgt
     1141 ggccctgcct cggtcactgc catccgtgag ggtgatgtgc atctagccca cgacggcccc
     1201 ttcgtctttg ccgaggtcaa tgcggactac atcacctggc tgtggcacga ggacaagagg
     1261 cgggagcgtg tgtactcgga caccaagaag attggcaggt gcatcagtac caaggcggtg
     1321 ggcagtgact cccgtgtgga catcacaggc ctctacaagt atccagaagg gtcacggaag
     1381 gagaggcagg tgtacggcaa agctttgaag aaactgctca gcgtggaagc ctgggggagg
     1441 agacggcgga tccgcagggc cagtgtgcgt ggcatctggc gcgatgacct cctggaacct
     1501 gtcaccaaac ccagcatcac tggcaagttc aaagtgctgg agccgccggt gctcggccag
     1561 gacctgaagc tggctttgtg cttgaccaac ctcaccacca gggcccagcg ggtccgagtc
     1621 aatgtgagcg gggccaccat cctctatacc cgcaagccgg tagcagagat cttgcgggaa
     1681 tcccacacca tgaagctggg gccactagaa gagaagagga tcccagtcac aatatcttac
     1741 tctcagtaca aagaagacct gacagaagac aagaagatcc tgctggctgc catgtgcctt
     1801 gtcagtaaag gagagaagct cctggtagag aaggacatca ccctggagga cttcatcacc
     1861 atcaaggtgc tgggaccagc ggtggtagga gtaacagttg ctgtggaagt cttggtgatc
     1921 aaccccctct cggaaagcgt aaaggactgt gtgctgatgg tagagggcag tggccttctc
     1981 caaggacagc tcagtgttga ggtgcccagc ttgaagcctc aggagagggc cttgatccaa
     2041 ttcaacataa ccccctccaa gagcggccca aggcagctgc aggtggacct tgtcagctca
     2101 cagttcccag acatcaaggg ctttgtgatt atccatgtgg ctacagccaa gtgatggcca
     2161 caaggaactt ggggaggatt ctgtccatct gttcgttcct cccatataag agccgggagt
     2221 ctcaggttag tcctgcttct gtctttgccc ttcaccagct taggcaaggt ccttcccagc
     2281 acattgatgg agatgctgga ctcagtgatc cttcaccttc agggcaagtg gctgatataa
     2341 gagcaaaggg accctctaac tctcgtcacc tttctgctgg gagaggggtg tgtcccagct
     2401 tctcaagatc cctggcccca gagctcggcc agctcagccc aggtaactca ctgcttcttg
     2461 cttttccatc acctcttcaa atgtcctggt cacatttgga cccaagaatt ctccaagcca
     2521 aagaaccccc attatagagg agccttcctg aagccataaa acaaagcaga agcaaagttg
     2581 agaaccaaat gattcatcca tgtgttcccc caaactcacg ttcttaaaaa gctttggatt
     2641 ttaagcaaca ggagattctt ctctaattcg agacactgac tctggatttg ggtggtggga
     2701 ctaaaactgc ctgagaacag ctgaagaaga caaaggagtt ctcacctaaa ctcagcatca
     2761 tgtacatact ctagctctgg ccatcctgaa gttcacagga ccaccccagg tcactcagcc
     2821 attctttctc agaagtagaa tggcttgcat tgtgcagatc ctacacttgg agtcaaagca
     2881 gaacatggat gcctggaatg aggaccagag tagacatgac cagaccatga tactggatat
     2941 gaaattcagc accgaaattt tctagacaga cagacaaatt aaaattaagc tacagtttaa
     3001 gaatgttgaa caacacaaca ggtgcatttg tatcctcttg gatacaaatg aagatgaggg
     3061 aactggagag atggctcagc cgttaagagt actt
//
