LOCUS       NM_001402279            2618 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transglutaminase 5 (Tgm5), mRNA.
ACCESSION   NM_001402279
VERSION     NM_001402279.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.15008.1,
                                           SRR26643294.14791.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-178               JAXUCZ010000003.1  128497584-128497761 c
            179-358             JAXUCZ010000003.1  128489283-128489462 c
            359-604             JAXUCZ010000003.1  128488467-128488712 c
            605-723             JAXUCZ010000003.1  128486625-128486743 c
            724-852             JAXUCZ010000003.1  128483232-128483360 c
            853-1030            JAXUCZ010000003.1  128482502-128482679 c
            1031-1169           JAXUCZ010000003.1  128468279-128468417 c
            1170-1273           JAXUCZ010000003.1  128467474-128467577 c
            1274-1513           JAXUCZ010000003.1  128467151-128467390 c
            1514-1879           JAXUCZ010000003.1  128463768-128464133 c
            1880-2040           JAXUCZ010000003.1  128463273-128463433 c
            2041-2174           JAXUCZ010000003.1  128462416-128462549 c
            2175-2618           JAXUCZ010000003.1  128461836-128462279 c
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..2618
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /note="transglutaminase 5"
                     /db_xref="GeneID:691932"
                     /db_xref="RGD:1593350"
     exon            1..178
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..2328
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /EC_number="2.3.2.13"
                     /note="glutamine gamma-glutamyltransferase 5;
                     transglutaminase 7-like 1"
                     /codon_start=1
                     /product="protein-glutamine gamma-glutamyltransferase 5"
                     /protein_id="NP_001389208.1"
                     /db_xref="GeneID:691932"
                     /db_xref="RGD:1593350"
                     /translation="MAQGLEVALTDLQSSRNNVRHHTEEISFDRLVVRRGQAFCITLY
                     FKNRGFQPGMDSIMFVAETGPLPDLAKGTRAVFSLTGSGGSSPWIASLEANRANSLEV
                     SLCAPPMAAVGRYLLKVRIDSYQGSVTAYQLGEFILLFNPWCPADTVYLESEPQRQEY
                     VVNDYGFIYQGSKSWIRPCPWNYGQFEENIIDICLELLEKSLNFQVDPSTDCALRGSP
                     VYISRVVCAMINSNDDSGVLNGNWSENYMDGANPAEWTGSVAILKQWHATGCQPVRYG
                     QCWVFAAVMCTVMRCLGIPTRVITNFDSGHDTDGNLIIDEYYDNTGRILENMKKDTVW
                     NFHVWNECWMARKDLPPGYGGWQVLDATPQETSNGLYCCGPASVKAIKEGEVDLNYDT
                     RFAFSMVNADCMSWLVYGGKEQKLHQDTATVGNFISTKSIQSDERDDVTENYKYEEGS
                     LQERQVFLKALQKLQAGRSQGPHQANSNPFSSMPPRQDSARSPTTPSLRPSDVLQVSL
                     KFELLDSPKMGQDINFVLLAVNMSPQFKDLKLNLSAQSLLHDGSPLAPFWQDTAFITL
                     FPKEEKTYPCKILYSQYSQYLSTDKLIRISALGEEKSSPEKILVNKIITLTFPGIMIN
                     VLGAAFVNQPLTVQVVFSNPLSEPVEDCVLTLEGSGLFRKQQRVLIGVLKPHNKASIT
                     LKTVPFKSGQRQIQANLRSNRFKDIKGYKNVYVDIGL"
     exon            179..358
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            359..604
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            605..723
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            724..852
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1030
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1169
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1273
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1513
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1514..1879
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..2040
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2041..2174
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2175..2618
                     /gene="Tgm5"
                     /gene_synonym="Tgm7l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgtgctc tgccctgtca gaggtggcag tgcagcagct ggccccacct ccagtgtctc
       61 tcggaacctt ggcatggaag gggaagcagc cactccggga tcagtttcct gaagcttcaa
      121 tccatccagc agtctggggg agcagtccag gagccagaag cagccactat ggcccaaggg
      181 ctagaggtgg ccctcacaga cctccagagc tcccggaaca atgttcggca ccacacggaa
      241 gagatcagtt ttgaccgtct tgttgtccgc cggggtcagg ccttctgcat caccctgtac
      301 tttaagaatc ggggcttcca gccaggcatg gacagtatca tgtttgtggc tgagactgga
      361 cccttgccgg acctggccaa agggactcgt gcagtgttta gcctcacagg cagtggtggc
      421 tcaagcccct ggattgcttc cctggaagcc aacagggcca actccctgga agtcagcctc
      481 tgtgcccctc ccatggcggc cgtgggtcga tacctcctga aagttcggat tgactcctac
      541 cagggttccg tcactgccta ccagctgggg gagttcatcc tgctcttcaa tccctggtgc
      601 ccagcggata cagtgtactt ggagagtgag ccccagaggc aggagtatgt tgtgaacgat
      661 tatggcttca tctaccaagg gagcaagagt tggatccgcc cgtgcccctg gaactatggg
      721 cagtttgaag agaacatcat agacatctgc ttggagctgc tagagaaaag cctgaacttc
      781 caggttgacc catccacaga ttgtgccctg cggggaagcc ccgtctacat cagcagagtt
      841 gtgtgtgcca tgataaacag caatgatgac agcggagtgc tcaatggcaa ctggagtgag
      901 aattatatgg acggtgccaa ccccgcagag tggactggca gtgtagccat cctaaagcag
      961 tggcatgcca cgggctgcca acccgtgcgc tatgggcagt gctgggtttt tgctgctgtc
     1021 atgtgcacag tgatgaggtg cctggggatt cccacccgcg tgatcaccaa ctttgactct
     1081 ggtcatgaca ccgatggtaa cctgatcatt gatgagtatt atgacaacac aggcagaatt
     1141 ttggagaata tgaagaagga tactgtctgg aatttccatg tgtggaatga atgctggatg
     1201 gcgcgcaagg acctccctcc tggatatgga ggctggcaag tgcttgatgc tacaccccag
     1261 gaaaccagca atggtctcta ctgctgtggc cctgcttctg tcaaagccat caaagaggga
     1321 gaagtcgatc tgaactatga tacacgcttt gcattttcta tggtgaatgc tgactgcatg
     1381 tcctggctag tctatggagg gaaggagcag aaacttcacc aggacacagc cactgttggg
     1441 aattttatca gcaccaagag catccagagt gatgagcgtg atgatgtcac tgagaactac
     1501 aagtatgaag aaggttccct tcaagagaga caggtgtttc taaaagctct gcagaagcta
     1561 caggctggaa ggtctcaagg gcctcaccaa gcaaactcaa atcccttcag ctccatgcca
     1621 ccacggcagg acagtgccag aagccccact acaccttccc ttcgacccag tgatgtcctc
     1681 caggtctctc tgaagtttga gctgctggac tcacccaaaa tgggccaaga tataaacttt
     1741 gtcctgttgg ctgtcaacat gtcacctcag ttcaaggatc tcaaactcaa cttgagtgcc
     1801 cagtctctgt tgcacgatgg cagccccctg gccccgtttt ggcaggacac ggcattcatc
     1861 acactgttcc ctaaagaaga aaagacctac ccttgcaaaa tcctctactc acagtacagc
     1921 cagtacctgt cgacagacaa gctaattcgc atcagtgccc tgggtgaaga gaagagcagt
     1981 cctgagaaaa tcctggtgaa caagatcatc accttgactt tcccaggcat catgattaac
     2041 gttctaggag ctgcctttgt gaatcagcca ctcactgtcc aggtggtctt ttcaaaccca
     2101 ctctcagagc cggttgagga ctgcgtgctg accttggaag gaagtggtct ctttaggaag
     2161 cagcagagag ttctcattgg agtcctcaaa ccgcataaca aagccagcat cactctaaag
     2221 actgtccctt tcaagagtgg ccaaagacag atccaagcta acctgagaag caataggttt
     2281 aaagacatca agggctacaa gaatgtgtac gtagacattg gcttataaac tctgagacag
     2341 aggctggaga attagctcag cggttgagcg tatgtgttgc ttctgcaaag gacttgggtt
     2401 caacttccca caacgcactt gggggccccc aatcatctgt aaccccagtt tccggggatc
     2461 aatccgacca gcacacatga tacacatcca tgcatgcagg ggaaaaaaag attttcatac
     2521 acataaagtg aaaataaata aatctaaatt ttttaaaaat tttatttaaa tttatttttt
     2581 aatttaaact tatttaaaat aaactctggg atataccg
//
