LOCUS       XM_039092942             601 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TCF3 fusion partner (Tfpt), transcript
            variant X8, mRNA.
ACCESSION   XM_039092942
VERSION     XM_039092942.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092942.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..601
                     /gene="Tfpt"
                     /gene_synonym="Amida"
                     /note="TCF3 fusion partner; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 109 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:85423"
                     /db_xref="RGD:620839"
     CDS             147..566
                     /gene="Tfpt"
                     /gene_synonym="Amida"
                     /codon_start=1
                     /product="TCF3 fusion partner homolog isoform X5"
                     /protein_id="XP_038948870.1"
                     /db_xref="GeneID:85423"
                     /db_xref="RGD:620839"
                     /translation="MRVLDSYGDDYRDSQFTIVLEDDGSQGTDVPTPGNVENEPPEKE
                     GLSPPQRTTATLDPSSPAPGEGPSGRKRRRAPRAASSLTPELAPVQVGAEGWGQGVIK
                     VEEDFGFEADEALDSSWVSRGPDKLLPYPTLASPPFD"
ORIGIN      
        1 gtccggtggt ctgggcgatt caggactccg ggagcgggat gaagaggaag aggcagcccg
       61 gggtcgcagg cgtcgccaac gggaattaaa ccgtagaaag taccaggcac taggtcggcg
      121 ctgccgggag atcgagcaga ttcctcatgc gagtgctgga ctcatacggg gatgactacc
      181 gggatagcca gttcaccatt gtgttggagg atgatggcag ccaaggcact gatgtcccta
      241 ccccaggcaa tgttgagaat gaacctccag agaaagaggg actttcccca ccacaaagga
      301 caactgcaac cctagacccc agcagcccag cccctggcga ggggcccagt gggcggaaga
      361 ggcggcgggc accacgagca gcatcttcat tgactccaga actggcccca gtgcaggtgg
      421 gagccgaggg ctggggccaa ggcgtgatta aggtcgagga agactttggc tttgaagcag
      481 atgaggcctt ggattcaagt tgggtttccc gagggccaga caaattgcta ccctacccta
      541 ccctagctag cccacccttt gactaaccct gtctccccaa taaacagatt ccccatgtac
      601 a
//
