LOCUS       NM_001008291            3527 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tuftelin interacting protein 11 (Tfip11), mRNA.
ACCESSION   NM_001008291 XM_213801
VERSION     NM_001008291.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3527)
  AUTHORS   Tannukit,S., Crabb,T.L., Hertel,K.J., Wen,X., Jans,D.A. and
            Paine,M.L.
  TITLE     Identification of a novel nuclear localization signal and
            speckle-targeting sequence of tuftelin-interacting protein 11, a
            splicing factor involved in spliceosome disassembly
  JOURNAL   Biochem Biophys Res Commun 390 (3), 1044-1050 (2009)
   PUBMED   19857462
REFERENCE   2  (bases 1 to 3527)
  AUTHORS   Yoshimoto,R., Kataoka,N., Okawa,K. and Ohno,M.
  TITLE     Isolation and characterization of post-splicing lariat-intron
            complexes
  JOURNAL   Nucleic Acids Res 37 (3), 891-902 (2009)
   PUBMED   19103666
REFERENCE   3  (bases 1 to 3527)
  AUTHORS   Ji,Q., Huang,C.H., Peng,J., Hashmi,S., Ye,T. and Chen,Y.
  TITLE     Characterization of STIP, a multi-domain nuclear protein, highly
            conserved in metazoans, and essential for embryogenesis in
            Caenorhabditis elegans
  JOURNAL   Exp Cell Res 313 (7), 1460-1472 (2007)
   PUBMED   17289020
REFERENCE   4  (bases 1 to 3527)
  AUTHORS   Herrmann,G., Kais,S., Hoffbauer,J., Shah-Hosseini,K.,
            Bruggenolte,N., Schober,H., Fasi,M. and Schar,P.
  TITLE     Conserved interactions of the splicing factor Ntr1/Spp382 with
            proteins involved in DNA double-strand break repair and telomere
            metabolism
  JOURNAL   Nucleic Acids Res 35 (7), 2321-2332 (2007)
   PUBMED   17389648
REFERENCE   5  (bases 1 to 3527)
  AUTHORS   Jurica,M.S., Licklider,L.J., Gygi,S.R., Grigorieff,N. and
            Moore,M.J.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
REFERENCE   6  (bases 1 to 3527)
  AUTHORS   Paine,C.T., Paine,M.L., Luo,W., Okamoto,C.T., Lyngstadaas,S.P. and
            Snead,M.L.
  TITLE     A tuftelin-interacting protein (TIP39) localizes to the apical
            secretory pole of mouse ameloblasts
  JOURNAL   J Biol Chem 275 (29), 22284-22292 (2000)
   PUBMED   10806191
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085809.1.
            
            On Dec 16, 2004 this sequence version replaced XM_213801.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085809.1, DQ342031.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3527
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..3527
                     /gene="Tfip11"
                     /note="tuftelin interacting protein 11"
                     /db_xref="GeneID:288718"
                     /db_xref="RGD:1311449"
     exon            1..73
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            74..261
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            262..479
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     CDS             271..2784
                     /gene="Tfip11"
                     /note="STIP-1; septin and tuftelin-interacting protein 1"
                     /codon_start=1
                     /product="tuftelin-interacting protein 11"
                     /protein_id="NP_001008292.1"
                     /db_xref="GeneID:288718"
                     /db_xref="RGD:1311449"
                     /translation="MSLSHLYRDGEGHLDDDDDERENFEITDWDLQNEFNPNRQRHWQ
                     TKEEATYGVWAERDSDEERPSFGGKRARDYSAPVNFISAGLKKGAAEEADSEDSDAEE
                     KPVKQEDFPKDLGPKKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKM
                     GYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTTQSLQDFPVADSEEEAEEEF
                     QKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRVSKKLTAPQKELSQVKVIDMTGREQ
                     KVYYSYSQISHKHSVPDEGVPLLAQLPPTAGKEAKVPGFALPELEHNLQLLIERTEQE
                     IIQSDRQLQYERDMVVSLSHELEKTAEVLAHEERVISNLSKVLALVEECEHRMQPHGA
                     DPLTLDECARIFETLQDKYYEEYRLADRADLAVAIVYPLVKDYFKDWHPLEDSNYGTQ
                     IISKWKSLLENDQLLSHSSQDLSSDAFHRLMWEVWMPFVRNVVAQWQPRNCEPMVDFL
                     DSWAHIIPVWILDNILDQLIFPKLQKEVDNWNPLTDTVPIHSWIHPWLPLMQARLEPL
                     YSPVRSKLSSALQKWHPSDASAKLILQPWKEVLTPGSWEAFMLRNIVPKLGMCLGELV
                     INPHQQHMDAFYWVMDWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEEITKW
                     YLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHTERR
                     KDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEG
                     KQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK"
     exon            480..633
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            634..790
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            791..918
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1071
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1599
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1706
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1875
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            1876..2119
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            2120..2262
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            2263..2428
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
     exon            2429..3500
                     /gene="Tfip11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttcggctag cgggtccctc gcaggctctg ggaaggtgga ccgaagttgt gtgattcacg
       61 ggtgctgagt gaggcgtgac tgtgaagtgt cgtccagaaa gaccacctcc ttccaatccc
      121 tcagaagcca ttcaggtttg ggaaggaaac cttcagtttt gtgagacagt atttcagaaa
      181 atgctctaaa gtttccctgg aactgcaaat cagctaggta caacttccct ggagaaggaa
      241 aggaccaact tggtttctga gtgactggcc atgtctctgt cccacttgta ccgggatggg
      301 gaaggccacc ttgatgatga cgatgacgag cgtgagaact ttgagatcac tgactgggat
      361 ctccagaatg agttcaaccc caaccggcag cgtcattggc agaccaaaga ggaggccacc
      421 tatggagtgt gggctgagcg tgactcagac gaggagaggc ccagcttcgg aggcaaacgg
      481 gcccgagact attctgcacc cgtcaacttc atcagtgcgg ggctcaagaa aggggcggct
      541 gaggaggctg actcggagga ctctgatgcc gaagagaagc ctgtgaaaca ggaagacttt
      601 cccaaggact taggaccaaa gaagttaaaa acgggtggca attttaagcc cagccagaaa
      661 ggctttgctg gaggaaccaa gtcgttcatg gactttggca gctgggagag acacacgaaa
      721 gggatcgggc agaagctgct gcagaagatg ggctacgtcc ctgggcgggg cctggggaag
      781 aacgcccagg gtatcatcaa ccccattgaa gccaagcaga ggaaaggcaa gggagctgtg
      841 ggggcctacg gctcggagag gaccactcag tctctgcagg acttccctgt ggccgactcc
      901 gaagaggagg cagaagagga gtttcagaag gagctgagcc agtggagaaa agaccccagc
      961 gggagcaaga agaagccaaa gtattcttac aagactgtgg aggagctgaa agccaaaggc
     1021 agggtcagca agaagctcac agcacctcag aaggagctct ctcaggtcaa ggtgatcgac
     1081 atgacaggcc gggagcagaa ggtgtactac agctacagcc agatcagcca caagcacagt
     1141 gtgcccgatg aaggggtgcc gttgctcgcg cagctgcctc ccacagctgg caaggaagcc
     1201 aaggtgccgg gcttcgcgct gcctgagctg gagcataacc tgcagctgct cattgagcgt
     1261 acggagcagg agatcatcca gagcgaccgg cagctgcagt acgagcggga catggtggtc
     1321 agcctgtcgc acgagctcga gaagacagcc gaggtgcttg ctcacgagga gcgggtcatc
     1381 tccaacctca gcaaggtgct ggccctggtg gaggaatgtg agcaccgcat gcagccccat
     1441 ggcgctgacc cgctcacgct ggatgagtgt gcccgcatct ttgagacact gcaggacaag
     1501 tactacgagg aataccgcct ggcggaccgc gcagacctcg ctgtggccat cgtctacccg
     1561 cttgtgaagg actacttcaa ggattggcac ccccttgagg acagcaacta cggcacccag
     1621 atcatctcca agtggaagag cctcctggag aacgaccagt tgctgtctca cagcagccag
     1681 gacctgtcct cagatgcctt ccacaggctc atgtgggagg tctggatgcc ttttgttcgg
     1741 aatgttgtcg cccagtggca acccaggaac tgtgagccca tggtggactt cctggacagc
     1801 tgggcacaca tcatccctgt gtggatcctg gacaatatcc tggaccagct catcttccct
     1861 aagctgcaga aggaggtgga caactggaac cccctgacag acaccgtccc gatccactca
     1921 tggatccacc cgtggctgcc actcatgcag gcccgcctgg agccgctcta ctcccctgtc
     1981 cgcagcaagc tgtctagtgc actgcagaaa tggcacccca gcgatgcctc agccaagctc
     2041 atcctgcagc cctggaaaga ggtcctcacc cctgggtcct gggaggcctt catgctcagg
     2101 aacatcgtgc ccaagctggg catgtgcctg ggtgagctcg tcatcaaccc ccaccagcag
     2161 cacatggacg ccttttactg ggtgatggac tgggagggca tgatctccgt ctccagcttg
     2221 gtgggattgc tggagaagca cttcttcccc aagtggcttc aggtgctgtg ctcctggctc
     2281 agtaatagcc ccaattacga ggagatcacc aagtggtacc tgggctggaa gtccatgttc
     2341 tcagaccagg tgctggcaca cccttctgtc aaggacaagt tcaacgaagc gctcgacatc
     2401 atgaacaggg ctgtgtcctc taatgttggt gcctacatgc agccaggtgc gagggagaac
     2461 attgcctacc tcacccacac ggagcgcagg aaggacttcc agtacgaggc catgcaggag
     2521 cgccgggagg ctgagaacat ggcacagagg ggcattggtg tggctgccag ctctgtgccc
     2581 atgaacttta aggacctcat tgagaccaag gcggaggagc acaacatcgt gttcatgcct
     2641 gtcattggca agcggcacga gggcaagcag ctctacacct ttggccgcat tgtcatctac
     2701 attgaccggg gtgtggtgtt tgtgcagggc gagaagacgt gggtgcccac ctccctgcag
     2761 agcctcatcg acatggccaa gtagacatgg gccacgacag acaggcgaat aaacagcact
     2821 gtgaaacaag ctggtaaata acgtctctat ttgggagacc atggcaccag ggcaggatgt
     2881 gactcagtgt ccccagtcgg gctgtagtcc cggcctagca aagagctggt gtggtgtgca
     2941 ctgtggcccc tggcccaggt ggagagaatg gtgtcctgct actccagctg agtggctgtg
     3001 ggtttcctga tgatctccag gtcctcacag ttctggtagt caggctcttc ccgggatgcc
     3061 cacaggtcct cagataagcc ttccagcttc agaagaggga accagtggac agatgtgtca
     3121 ttgaaggtgt cggtgtactg gggagtttga ggcagtggga actcctccag gcctttcaga
     3181 atctgagtgg aaagggccag acacaggcat taggcatggc ccactctttg ttcacctgcc
     3241 taccccactg tccttttgag ataagaaatg gggatttgta tttgagcact tttcagttcc
     3301 acgggtagtg ggaatgctgg gctcaccccg agggtgaagg gcacagatta ggagagggac
     3361 cagctggttg tggatggaca gtgtggcttt gcacccctac cccagcccag ctattctgtc
     3421 agacaccttt gcaatgtatg agtaattttc ctgaagaatc ctcgccaaca acctacaaat
     3481 aaaaaacaca tatgcaatta aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
