LOCUS       XM_039088479            2061 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trafficking from ER to golgi regulator
            (Tfg), transcript variant X5, mRNA.
ACCESSION   XM_039088479
VERSION     XM_039088479.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088479.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2061
                     /gene="Tfg"
                     /note="trafficking from ER to golgi regulator; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 44 ESTs, 14 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 51 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360709"
                     /db_xref="RGD:1309751"
     CDS             393..1229
                     /gene="Tfg"
                     /codon_start=1
                     /product="protein TFG isoform X5"
                     /protein_id="XP_038944407.1"
                     /db_xref="GeneID:360709"
                     /db_xref="RGD:1309751"
                     /translation="MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVF
                     RGKLLSNDEVTIKYKDEDGDLITIFDSSDLSFAIQCSRILKLTLFVNGQPRPLESSQV
                     KYLRRELIELRNKVNRLLDSLEPPGEPGPSTSIPENDTVDGREEKPAASDSSGKQSTQ
                     VMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVSGPPSAPTEDRSGTPDSIASSSSAA
                     HPAAGQPQQPPYAGAQTQAGQMYQQYQQQAGYSAQQPQAPPQQYGIQYSGFQSMERFH
                     CK"
ORIGIN      
        1 tgaggaagct gggccgctca cccgacgcag cggggtcttc gcccgtcccg cccctcactc
       61 cactgcgcat gcgctctggt tggcctgtcc gtcttgaggc ggggcgccag ggcagttttt
      121 ttttctttgc tcccgcccct gcgcttccca cctgccacgt acgggaccgc ggctcttgct
      181 aggctcgttg ggtgtgtgcg attggccagg tccgcgcagc ctgcagctcg gcgacgatcg
      241 gcggagggcg gccgggtgga cggtgtcggt agcctccctg cgacactgcg gagcccgcgg
      301 cggcctcgta gcgacccggt cagctgaggc ggcggcctgg gcaagccgtt tttcccctag
      361 agttatatat atagagcatc ctggagtcca caatgaacgg acagttggac ctaagtggga
      421 agctgattat caaagctcaa cttggagaag atatccggcg aattcccatt cataatgaag
      481 acattactta tgatgaatta gtgctgatga tgcagcgagt attcagagga aagcttctga
      541 gtaatgatga agttacaata aagtataagg atgaggatgg agatcttata acaatttttg
      601 atagttctga cctttccttt gcaattcagt gtagtagaat actgaaactg acattatttg
      661 ttaatggcca gccaagaccc cttgaatcaa gtcaggtgaa atatcttcgt cgagaactga
      721 tagaacttcg gaataaagtg aatcgcttat tggacagctt agagccgcct ggagaaccag
      781 ggccttccac cagtattcct gaaaatgata ctgtggatgg tagggaagaa aagcctgctg
      841 cttctgattc ttctgggaaa cagtctactc aggttatggc agcaagtatg tcagcttttg
      901 atcctctaaa aaaccaagat gaaatcaaca aaaatgtcat gtcagcattt ggattaacag
      961 acgaccaggt ttcaggacca cccagtgctc ctacagaaga ccgttccgga acacctgaca
     1021 gcattgcttc ttcctcttcg gcagcacacc cagcagcagg tcagccacag caacctccct
     1081 atgcaggagc tcagacacaa gcaggtcaga tgtaccaaca gtaccagcag caggctggct
     1141 acagtgcaca gcagcctcag gcccctcctc agcagtacgg tattcagtat tcaggattcc
     1201 agtcaatgga gaggtttcat tgcaagtagc tgcagctagt tacagccagc agactggacc
     1261 ccaacaacct cagcagttcc agggatatgg ccaacaacca acttcccagg caccggctcc
     1321 tgccttttct ggccagccac aacaactgcc cgctcaacca ccacagcagt accaggcgag
     1381 cacttaccct ccacagactt acactaccca gacatctcag cctgctaact atactgttcc
     1441 ccccggctct cagcctggaa tggctccaag ccaacctggt gcttaccaac caagaccagg
     1501 ttttacacca tctcctgcaa gtaccatggc ccctccttcc actggggcta acccttatgc
     1561 tcgtaaccgt cctccttttg gtcagggcta tacccaacct ggacctggtt atcgataagg
     1621 aggttcagcc acactaataa tgatggctta ttgcctccta aaagactata caatactatt
     1681 ttgtttcaat ttgtattgta ttgaagttta aaaatttaaa aagcagagca tttttttatg
     1741 atatcattgt tgctgttaat tgaaaatata atttactgga atacaaacac aaaaagacca
     1801 aaatgaacat tgtttcctcc cctgcttaaa attgtagccg cttcctaatt attttggaac
     1861 actactctta cctgcgtgta aaatgattgg ctttctagct tcccagagaa tattaaaaag
     1921 ttaggctaag gtatagccat cacacttggc tatttactat taacatgatg tactaaataa
     1981 aaatagagcc ctttgagaag atgactagac attatgtata aaatgtaaca ttgataggct
     2041 aataaaggtg attgaatcca a
//
