LOCUS       XM_006244446            3454 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor EB (Tfeb),
            transcript variant X3, mRNA.
ACCESSION   XM_006244446
VERSION     XM_006244446.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244446.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244446.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3454
                     /gene="Tfeb"
                     /gene_synonym="Tcfeb"
                     /note="transcription factor EB; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 29 ESTs, 30 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     74 samples with support for all annotated introns"
                     /db_xref="GeneID:316214"
                     /db_xref="RGD:1309583"
     CDS             1438..2868
                     /gene="Tfeb"
                     /gene_synonym="Tcfeb"
                     /codon_start=1
                     /product="transcription factor EB isoform X1"
                     /protein_id="XP_006244508.1"
                     /db_xref="GeneID:316214"
                     /db_xref="RGD:1309583"
                     /translation="MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQQ
                     LGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETYGN
                     KFAAHVSPAQGSPKPPPAASPGVRAGHVLSTSAGNSAPNSPMAMLHISSNPEKEFDDV
                     IDNIMRLDSVLGYINPEMQMPNTLPLSSSHLNVYSGDPQVTASLVGVTSSSCPADLTQ
                     KRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGT
                     ILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPTTSPS
                     GVNMAELAQQVVKQELPSEDNPGETLMLGSEVPDPEPMPALPPQAPLPSAAQPQSPFH
                     HLDFSHGLSFGGGGDEGPAGYPDPLGTEHGSPFPNLSKKDLDLMLLDDSLLPLASDPL
                     FSTMSPEASKASSRRSSFSMEEGDVL"
ORIGIN      
        1 actgagccat ctctccagcc ccctcaactg gcccttctaa acttgagagc tggcagccca
       61 gtgtcagtcc agattcctac tgtctgacaa aagagtgtgg ctctaaaccg tttatttgga
      121 aggtttcccg aggactacct gggaaagtag ggtccagggc tctggaaggg caggaatcag
      181 ataaaatgta aattgtaaag gtgtgctatt gtctctctct ctctctctca tgggggaggg
      241 tcttagatca tgctttgagg ttatccaggg agggttttgg ctggggtcca tagtgggtca
      301 ctggggcagg aagctaatcg ccatcacctc tggctgcata tggtagtgct taggtggact
      361 gcttgtggca gagatgtggg ccagaggatg tggctggacc cttagcagct tcttctgggt
      421 tcaccaaacc cagcccggtg gtcagcctag ccctctttct acaactccct ttggtctgtg
      481 tccaaggcag ccccttcccc taggctccat ggcacagtct acgttcaaca gacgtagaga
      541 atctacaagg tcccattaac tgaaagagga agctggcagg atctcttcct tggtgtacga
      601 atatgtgttt actgcattcc caacactgag cccccagagt gctacgtttt catctacaaa
      661 ggtttgtgac ctgctgggtg gcacatagcc tgaaccaaca gtccccctca gaagtggaaa
      721 acatgattat tattttgttt gttgagactg ggtctctcga tgtagctcta gctgccctgg
      781 agctcacctt cggtgttctg ggattttagg cctgtgccac cacaccctgc taagagtccc
      841 cttcaacttc ccaaggctgt cacagctgtc attattcctt ccttttcttt tgctgcccct
      901 gccttttctc caggcccatg gctaccccgt gacagtcagt tagtcactat agcagggagt
      961 caagtcttct ggtgtccttc tctttgtgtg cccttctaaa taagacgcaa tttgtggcac
     1021 gtggtgtgtg tgggagttag ttttgcaaag tcgcccctgt ttcttcctgg tgaaggatct
     1081 gtggagtctg ctctgagagg ggccaacctc tgattccact cctaccccag ccctgctgac
     1141 ctcatgctgt ggggctctac ctagtgggga gcctacctag gtagggagag agagtcaaaa
     1201 agagggagtg gtaggtaggt tatgactcag tcggtggagt gcttgtccag tgcacatgga
     1261 actcagggtt tgattttcag acccatgcga aaccaagctt agtggctcaa gtctgtaatc
     1321 caagtacttg ggatgcggag gcagaaggtc agaagataag gtcatcttca cctctgtagt
     1381 gagtttgagg ccagtgtggc tgcatgagat gctggggagc cggaatcaac cgctgccatg
     1441 gcgtcgcgca tcgggctgcg catgcagctc atgcgggagc aggcgcagca ggaggagcag
     1501 cgagagcgca tgcagcagca ggccgtcatg cattacatgc agcagcagca acagcagcag
     1561 cagcagcagc tgggaggccc tcccacccca gccatcaaca ccccagttca cttccagtcg
     1621 ccaccaccag tgcctgggga ggtgctgaag gtgcagtcct acctggagaa ccccacctcc
     1681 taccacctgc agcagtctca gcatcagaaa gtccgagagt acctgtccga gacctacggc
     1741 aacaagtttg ctgcccacgt cagcccagcc caaggctccc cgaagcctcc accagcagca
     1801 tcccctgggg tgcgggctgg acatgtactg tccacctcgg ccggcaacag tgcccccaac
     1861 agtcccatgg ccatgctaca catcagctcc aatcctgaga aagagtttga tgatgtcatc
     1921 gacaacatta tgcgcctgga cagcgtgctg ggctacatca accccgaaat gcagatgcct
     1981 aacacgctac ccctgtccag cagccacctg aacgtgtaca gtggtgaccc ccaggtcacg
     2041 gcttccctgg taggtgtcac cagcagttcc tgccctgccg acctgactca gaagcgagag
     2101 ctaacagatg ctgagagccg ggccctggcc aaggaacggc agaagaaaga caatcacaac
     2161 ttaattgaga gaagacgcag gttcaacatc aatgacagaa tcaaggagct gggaatgctg
     2221 atccccaagg ccaatgacct ggacgtgcgc tggaacaagg gcaccatcct caaggcctct
     2281 gtggattaca tccggaggat gcagaaagac ctgcagaagt cccgggagct ggagaaccac
     2341 tctcggcgcc tggagatgac caacaagcag ctctggcttc gcatccagga gctggagatg
     2401 caggcacgcg tgcacggtct tcccaccacc tcaccgtccg gtgtgaatat ggccgagctg
     2461 gcccaacagg tggtgaagca agagctgccc agtgaagata acccagggga gaccctgatg
     2521 ctggggtccg aggtccctga ccctgagccc atgccggctc tcccacccca ggccccgctg
     2581 ccctcagccg cccagccaca gtctccgttc catcacctgg acttcagcca tggcctgagc
     2641 tttgggggtg ggggcgatga ggggcccgca ggctaccctg atcccctggg gacagagcat
     2701 ggctcccctt tccccaacct gtccaagaag gatctggact taatgctcct agatgactcc
     2761 ttgctccccc tggcctctga tcccctcttt tctaccatgt ctcctgaggc ctccaaggct
     2821 agcagccggc gaagcagctt cagcatggag gagggcgacg ttctgtgacc ctggctgccc
     2881 ccgtgccaag gagcagggct gcctgggagc tgggaggact gggcagagcc ctcccatcct
     2941 tcaggctgca cttggtgtga agtagctgcc tctctccttc cccttggttg ctccccccca
     3001 cccctgtttg gacttagtgc ctgcctggca gtcgacgggg ctggaaagct ctcccctcgg
     3061 cttcgggccc cctcctctgg cggcagtcct atgatgggga aggacagggg tgaggcagaa
     3121 gagaaataag aagaaaccct gctaggggag cccctctctt ctgagcctgg gctttcccat
     3181 gaagggcatt ttggagaagg gggtacaagt acctctgagg cagcagctgg tctgggggtg
     3241 cccaggcctg ccttcctggg actagatggc acccagcctg tccccccagc ctgaatttcc
     3301 ccacaagtgg gcacccaccc ccatttggtg ctaacagctc tcccctggtg gtatgagggt
     3361 ggggtggcca gaagaggagt ctgggttcag ggtggtgagc actcccaccc ccagacctcc
     3421 cactttgtgc ctttagtaaa cactgtgctt tgta
//
