LOCUS       XM_006244442            2182 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor EB (Tfeb),
            transcript variant X1, mRNA.
ACCESSION   XM_006244442
VERSION     XM_006244442.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244442.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006244442.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2182
                     /gene="Tfeb"
                     /gene_synonym="Tcfeb"
                     /note="transcription factor EB; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 33 ESTs, 1 long SRA read, 30 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 222 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:316214"
                     /db_xref="RGD:1309583"
     CDS             166..1596
                     /gene="Tfeb"
                     /gene_synonym="Tcfeb"
                     /codon_start=1
                     /product="transcription factor EB isoform X1"
                     /protein_id="XP_006244504.1"
                     /db_xref="GeneID:316214"
                     /db_xref="RGD:1309583"
                     /translation="MASRIGLRMQLMREQAQQEEQRERMQQQAVMHYMQQQQQQQQQQ
                     LGGPPTPAINTPVHFQSPPPVPGEVLKVQSYLENPTSYHLQQSQHQKVREYLSETYGN
                     KFAAHVSPAQGSPKPPPAASPGVRAGHVLSTSAGNSAPNSPMAMLHISSNPEKEFDDV
                     IDNIMRLDSVLGYINPEMQMPNTLPLSSSHLNVYSGDPQVTASLVGVTSSSCPADLTQ
                     KRELTDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKANDLDVRWNKGT
                     ILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQELEMQARVHGLPTTSPS
                     GVNMAELAQQVVKQELPSEDNPGETLMLGSEVPDPEPMPALPPQAPLPSAAQPQSPFH
                     HLDFSHGLSFGGGGDEGPAGYPDPLGTEHGSPFPNLSKKDLDLMLLDDSLLPLASDPL
                     FSTMSPEASKASSRRSSFSMEEGDVL"
ORIGIN      
        1 ggggcgggcc tggctggtgg cgcgtagccc gaggagcccg acagcgggcg gcgggcgaag
       61 ctcgggggcc gggcacccga acttgggaca agttgccgga acctcagggc gccggcggcg
      121 gacagattga ccttcagagc gagggagccg gaatcaaccg ctgccatggc gtcgcgcatc
      181 gggctgcgca tgcagctcat gcgggagcag gcgcagcagg aggagcagcg agagcgcatg
      241 cagcagcagg ccgtcatgca ttacatgcag cagcagcaac agcagcagca gcagcagctg
      301 ggaggccctc ccaccccagc catcaacacc ccagttcact tccagtcgcc accaccagtg
      361 cctggggagg tgctgaaggt gcagtcctac ctggagaacc ccacctccta ccacctgcag
      421 cagtctcagc atcagaaagt ccgagagtac ctgtccgaga cctacggcaa caagtttgct
      481 gcccacgtca gcccagccca aggctccccg aagcctccac cagcagcatc ccctggggtg
      541 cgggctggac atgtactgtc cacctcggcc ggcaacagtg cccccaacag tcccatggcc
      601 atgctacaca tcagctccaa tcctgagaaa gagtttgatg atgtcatcga caacattatg
      661 cgcctggaca gcgtgctggg ctacatcaac cccgaaatgc agatgcctaa cacgctaccc
      721 ctgtccagca gccacctgaa cgtgtacagt ggtgaccccc aggtcacggc ttccctggta
      781 ggtgtcacca gcagttcctg ccctgccgac ctgactcaga agcgagagct aacagatgct
      841 gagagccggg ccctggccaa ggaacggcag aagaaagaca atcacaactt aattgagaga
      901 agacgcaggt tcaacatcaa tgacagaatc aaggagctgg gaatgctgat ccccaaggcc
      961 aatgacctgg acgtgcgctg gaacaagggc accatcctca aggcctctgt ggattacatc
     1021 cggaggatgc agaaagacct gcagaagtcc cgggagctgg agaaccactc tcggcgcctg
     1081 gagatgacca acaagcagct ctggcttcgc atccaggagc tggagatgca ggcacgcgtg
     1141 cacggtcttc ccaccacctc accgtccggt gtgaatatgg ccgagctggc ccaacaggtg
     1201 gtgaagcaag agctgcccag tgaagataac ccaggggaga ccctgatgct ggggtccgag
     1261 gtccctgacc ctgagcccat gccggctctc ccaccccagg ccccgctgcc ctcagccgcc
     1321 cagccacagt ctccgttcca tcacctggac ttcagccatg gcctgagctt tgggggtggg
     1381 ggcgatgagg ggcccgcagg ctaccctgat cccctgggga cagagcatgg ctcccctttc
     1441 cccaacctgt ccaagaagga tctggactta atgctcctag atgactcctt gctccccctg
     1501 gcctctgatc ccctcttttc taccatgtct cctgaggcct ccaaggctag cagccggcga
     1561 agcagcttca gcatggagga gggcgacgtt ctgtgaccct ggctgccccc gtgccaagga
     1621 gcagggctgc ctgggagctg ggaggactgg gcagagccct cccatccttc aggctgcact
     1681 tggtgtgaag tagctgcctc tctccttccc cttggttgct cccccccacc cctgtttgga
     1741 cttagtgcct gcctggcagt cgacggggct ggaaagctct cccctcggct tcgggccccc
     1801 tcctctggcg gcagtcctat gatggggaag gacaggggtg aggcagaaga gaaataagaa
     1861 gaaaccctgc taggggagcc cctctcttct gagcctgggc tttcccatga agggcatttt
     1921 ggagaagggg gtacaagtac ctctgaggca gcagctggtc tgggggtgcc caggcctgcc
     1981 ttcctgggac tagatggcac ccagcctgtc cccccagcct gaatttcccc acaagtgggc
     2041 acccaccccc atttggtgct aacagctctc ccctggtggt atgagggtgg ggtggccaga
     2101 agaggagtct gggttcaggg tggtgagcac tcccaccccc agacctccca ctttgtgcct
     2161 ttagtaaaca ctgtgctttg ta
//
