LOCUS       XM_039099779            1384 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor binding to IGHM
            enhancer 3 (Tfe3), transcript variant X13, mRNA.
ACCESSION   XM_039099779
VERSION     XM_039099779.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099779.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1384
                     /gene="Tfe3"
                     /gene_synonym="RGD1559642; Tcfe3"
                     /note="transcription factor binding to IGHM enhancer 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 37 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:317376"
                     /db_xref="RGD:1559642"
     CDS             275..1279
                     /gene="Tfe3"
                     /gene_synonym="RGD1559642; Tcfe3"
                     /codon_start=1
                     /product="transcription factor E3 isoform X5"
                     /protein_id="XP_038955707.1"
                     /db_xref="GeneID:317376"
                     /db_xref="RGD:1559642"
                     /translation="MSHATETARDGVEASAEGPRAVFVLLEERRPADSAQLLSLNSLL
                     PESGIVADIELENILDPDSFYELKSQPLSLRSSLPISLQATPTTPATLSASSSAGGSR
                     TPAMSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGG
                     HTLSRPPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPP
                     PGPSSAQPLPAPETAHATGPTGSAPNSPMALLTIGSSSEKELPVSGNLLDVYSSQGVA
                     TPAITVSNSCPAELPNIKREISGMKYQAWFKTSFKTVNRSIVVQDCGPSTWKTLWATY
                     "
ORIGIN      
        1 ctgtggagtt tccccagccc aaggaggagg gggaaagagg acgagaggga ggcgagcggt
       61 cgttcggggt taggttgggg ggtgtcggtc cgttcagggc gggtgatgac tcacggccca
      121 tcccatcttc ccgacgccgc ccgcccacgc agagctagct ccatggctta acggaggagg
      181 cagcggcaag cggggggagg gggactctta ttttgttagg gggaccgggc caaggcccga
      241 ccggcctggc agggctcgcc cggggccggg cgtcatgtct catgcaactg agacagctcg
      301 ggacggcgta gaggccagcg cggagggccc tcgagccgtg ttcgtgctgt tggaagagcg
      361 caggccagct gactcggccc agctgctcag cctgaattct ttgcttccgg aatccgggat
      421 tgttgctgac atcgagttag aaaacatcct tgatcctgac agcttctacg agctcaaaag
      481 ccagcctcta tcccttcgct ccagccttcc aatatcactg caggccactc cgaccacccc
      541 agctacactc tctgcatcgt cttctgcagg gggctcccgg acccctgcca tgtcatcctc
      601 ctcctcacgg gtcttgctgc ggcagcagct tatgagggcc caggcacagg aacaggagag
      661 gcgtgagcgg cgggaacagg cagcggccgc tccgttcccc agtcctgcac ctgcctcacc
      721 agccatctca gtgattggtg tgtctgctgg tggccacaca ttgagtcgtc caccccctgc
      781 tcaggtgccc agggaggtac tcaaggttca aacccaccta gagaacccta cacgctacca
      841 cttgcagcaa gctcgccggc aacaggtgaa acagtacttg tctactacac ttgggcccaa
      901 gctggcttca caggccctca ccccaccacc agggccttcc agtgctcagc cacttcctgc
      961 ccctgaaact gctcatgcca ccggccctac aggcagtgct cctaacagcc ccatggcatt
     1021 gctcaccatt gggtccagct cagagaagga gctgcctgtg tcaggaaatc tacttgatgt
     1081 gtacagcagt cagggtgtgg ccaccccagc catcactgtc agcaattcct gtcctgctga
     1141 gctgcctaac atcaaacggg agatctcggg catgaagtac caggcctggt tcaagacatc
     1201 ttttaaaaca gtcaacagaa gtatcgtggt gcaagattgt ggtcccagca cttggaagac
     1261 actatgggct acatattgaa gccctggctt ttaaataaaa agacagaaga gaagaagagg
     1321 aggaggaaga agaggaggag gaagaagaag aggaagaaga agaaggagga ggaagaggag
     1381 gagg
//
