LOCUS       XM_039099775            2981 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor binding to IGHM
            enhancer 3 (Tfe3), transcript variant X5, mRNA.
ACCESSION   XM_039099775
VERSION     XM_039099775.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2981
                     /gene="Tfe3"
                     /gene_synonym="RGD1559642; Tcfe3"
                     /note="transcription factor binding to IGHM enhancer 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 27 ESTs, 3 long SRA reads, 26 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 45 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:317376"
                     /db_xref="RGD:1559642"
     CDS             222..1628
                     /gene="Tfe3"
                     /gene_synonym="RGD1559642; Tcfe3"
                     /codon_start=1
                     /product="transcription factor E3 isoform X3"
                     /protein_id="XP_038955703.1"
                     /db_xref="GeneID:317376"
                     /db_xref="RGD:1559642"
                     /translation="MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASP
                     AISVIGVSAGGHTLSRPPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLG
                     PKLASQALTPPPGPSSAQPLPAPETAHATGPTGSAPNSPMALLTIGSSSEKEIDDVID
                     EIISLESSYNDEMLSYLPGGTAGLQLPSTLPVSGNLLDVYSSQGVATPAITVSNSCPA
                     ELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPEMR
                     WNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLP
                     VPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQQPPAPPSD
                     TLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSVSP
                     AVSKSSSRRSSFSMEDES"
ORIGIN      
        1 gggtgggcac ctcagaaatc tgcctgaatt ctttgcttcc ggaatccggg attgttgctg
       61 acatcgagtt agaaaacatc cttgatcctg acagcttcta cgagctcaaa agccagcctc
      121 tatcccttcg ctccagcctt ccaatatcac tgcaggccac tccgaccacc ccagctacac
      181 tctctgcatc gtcttctgca gggggctccc ggacccctgc catgtcatcc tcctcctcac
      241 gggtcttgct gcggcagcag cttatgaggg cccaggcaca ggaacaggag aggcgtgagc
      301 ggcgggaaca ggcagcggcc gctccgttcc ccagtcctgc acctgcctca ccagccatct
      361 cagtgattgg tgtgtctgct ggtggccaca cattgagtcg tccaccccct gctcaggtgc
      421 ccagggaggt actcaaggtt caaacccacc tagagaaccc tacacgctac cacttgcagc
      481 aagctcgccg gcaacaggtg aaacagtact tgtctactac acttgggccc aagctggctt
      541 cacaggccct caccccacca ccagggcctt ccagtgctca gccacttcct gcccctgaaa
      601 ctgctcatgc caccggccct acaggcagtg ctcctaacag ccccatggca ttgctcacca
      661 ttgggtccag ctcagagaag gagattgatg atgtcattga tgagatcatc agcctggagt
      721 ccagttacaa cgatgagatg ctcagctatc ttcctggagg cactgcaggg ctgcagctcc
      781 ccagcacgct gcctgtgtca ggaaatctac ttgatgtgta cagcagtcag ggtgtggcca
      841 ccccagccat cactgtcagc aattcctgtc ctgctgagct gcctaacatc aaacgggaga
      901 tctcggaaac cgaggcaaag gcccttttga aggagcgaca gaagaaagac aatcacaacc
      961 taattgaacg acgcaggcga ttcaacatta acgataggat caaagagctg ggcaccctca
     1021 tccccaagtc caatgatccg gagatgcgct ggaacaaggg aaccatcctg aaggcatctg
     1081 tggattatat ccgcaaatta cagaaggaac agcagcgctc taaagacctg gagagccggc
     1141 agcggtccct ggagcaagcc aaccgaagcc tgcagctccg aattcaggag ctggaactac
     1201 aggcacagat ccatggtctg ccggtccctc ccaacccagg actgctctcc ctagccacca
     1261 gctcggtctc tgacagcctc aagccggaac aactggacat tgaggaggag ggcaggccaa
     1321 gcacaacaac atttcatgtg tcaggggggc ctacccagaa tgctcctcca caacagcctc
     1381 cggcaccgcc ttcggatacc cttctggacc tgcactttcc cagcgaccac ttgggggacc
     1441 tgggggaccc cttccaccta gggctagagg acattctgat ggaggaggag gggatggtgg
     1501 gaggactgtc agggggtgcc ctgtccccac tgcgggctgc ttccgacccc ctgctttctt
     1561 cagtatcccc ggctgtttcc aagtcgagca gccggcgcag cagcttcagc atggaagacg
     1621 agtcctgatc aggcctcact cctcccctcg ggcttcccca cccagggaag gagaacaagc
     1681 ctggatgaga ccctaccctc ctgtgacact gtcctgtcca ggagatctgg ggaacgagga
     1741 gttgcaatca ggccccaacc ctgtactagg ccaggaggag gaatcaggtg aggccctgcc
     1801 acttttccag aggacctgcc ttgtgcaggt atttgtgagg gagaaggcag gggagaactg
     1861 ggaaaggtca gttcatcact tgagcatcat agccttaccc cttgtccctg gtcctactcc
     1921 tgcctcggtg agggaaggag gcaggacaag gtatgcccct ggtcactagg gacccttata
     1981 aacctgttta taaaggtctc ccaaggaaag gagatgccag ggtgccgctc cattccttct
     2041 ctgggaagtg ccaggccagc ttttcctggc actggaggaa gaaaagtaaa aatagtgtct
     2101 cacccctgga gggttgatcc ctatccctac cttatgaccc ctgacttgtt ctggcaagga
     2161 acagaagtaa ggatgtgatc cagcccattg ccctgggccc catcccttct ccataggaaa
     2221 agctcagcac aggtatttca ggtagagagg aatgactagg ctctgatctc ccacgtagag
     2281 gctccagccc cagccctgac ccttagcatc ataccgtgca agcattccat tcagttccta
     2341 agctccctgt cttaacctgg gaccagcctg gaacctgaca tatgagggct ctgtgctgac
     2401 cttattcttg aggaagggaa cagatttcga aatcttgtgg attgacattc tagacctaga
     2461 tcaagtgaga cttagatcct cacccttgag aagatcttgc cttttctgcc ttgagggcca
     2521 atttggggga gatgataggg attagtgtag acccagtcta ggtaccccaa tacttccctt
     2581 caagttgtag aaaatggtaa agaaagggcg tgtccaggct gtttatcagt ccagggaaaa
     2641 atagaaatct ccctaaaagg cagggacctg aaggaatggt ggcaaaagta tattgtatcg
     2701 ctcatttgtt tgtgaatttt ttattgaacc cacctactca aaagctaggt caccccggac
     2761 ctctgtccca tccacaccgt tctccatctg ggggactaac cctgtttcag agccagtcct
     2821 tagagccagt ccctacctac tagtcccatc catgccacct acatccaagg tcttcagctt
     2881 taaactgctg gggccaggcc ccaaggaggg tttactgagg ggtccgtagg tttgactaaa
     2941 ataataaatg ctaggcgtgt ttgatgcgct tttaactttg g
//
