LOCUS       XM_006256727            3144 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor binding to IGHM
            enhancer 3 (Tfe3), transcript variant X3, mRNA.
ACCESSION   XM_006256727
VERSION     XM_006256727.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006256727.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006256727.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3144
                     /gene="Tfe3"
                     /gene_synonym="RGD1559642; Tcfe3"
                     /note="transcription factor binding to IGHM enhancer 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 27 ESTs, 3 long SRA reads, 26 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 192 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:317376"
                     /db_xref="RGD:1559642"
     CDS             385..1791
                     /gene="Tfe3"
                     /gene_synonym="RGD1559642; Tcfe3"
                     /codon_start=1
                     /product="transcription factor E3 isoform X3"
                     /protein_id="XP_006256789.1"
                     /db_xref="GeneID:317376"
                     /db_xref="RGD:1559642"
                     /translation="MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASP
                     AISVIGVSAGGHTLSRPPPAQVPREVLKVQTHLENPTRYHLQQARRQQVKQYLSTTLG
                     PKLASQALTPPPGPSSAQPLPAPETAHATGPTGSAPNSPMALLTIGSSSEKEIDDVID
                     EIISLESSYNDEMLSYLPGGTAGLQLPSTLPVSGNLLDVYSSQGVATPAITVSNSCPA
                     ELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPEMR
                     WNKGTILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLP
                     VPPNPGLLSLATSSVSDSLKPEQLDIEEEGRPSTTTFHVSGGPTQNAPPQQPPAPPSD
                     TLLDLHFPSDHLGDLGDPFHLGLEDILMEEEGMVGGLSGGALSPLRAASDPLLSSVSP
                     AVSKSSSRRSSFSMEDES"
ORIGIN      
        1 tggggggagg cctcaagcct tatatgggaa cccagaggag ggtcttgttt ctgttgccac
       61 tcgccctggc ctcgcagctg gccctgccca ctccctaccc acacaccccc tcttcctttt
      121 atttcgccct cccagccggt ctttcagttc ccgggtgtaa tcttgaatca gtctctagag
      181 ctggacctga attctttgct tccggaatcc gggattgttg ctgacatcga gttagaaaac
      241 atccttgatc ctgacagctt ctacgagctc aaaagccagc ctctatccct tcgctccagc
      301 cttccaatat cactgcaggc cactccgacc accccagcta cactctctgc atcgtcttct
      361 gcagggggct cccggacccc tgccatgtca tcctcctcct cacgggtctt gctgcggcag
      421 cagcttatga gggcccaggc acaggaacag gagaggcgtg agcggcggga acaggcagcg
      481 gccgctccgt tccccagtcc tgcacctgcc tcaccagcca tctcagtgat tggtgtgtct
      541 gctggtggcc acacattgag tcgtccaccc cctgctcagg tgcccaggga ggtactcaag
      601 gttcaaaccc acctagagaa ccctacacgc taccacttgc agcaagctcg ccggcaacag
      661 gtgaaacagt acttgtctac tacacttggg cccaagctgg cttcacaggc cctcacccca
      721 ccaccagggc cttccagtgc tcagccactt cctgcccctg aaactgctca tgccaccggc
      781 cctacaggca gtgctcctaa cagccccatg gcattgctca ccattgggtc cagctcagag
      841 aaggagattg atgatgtcat tgatgagatc atcagcctgg agtccagtta caacgatgag
      901 atgctcagct atcttcctgg aggcactgca gggctgcagc tccccagcac gctgcctgtg
      961 tcaggaaatc tacttgatgt gtacagcagt cagggtgtgg ccaccccagc catcactgtc
     1021 agcaattcct gtcctgctga gctgcctaac atcaaacggg agatctcgga aaccgaggca
     1081 aaggcccttt tgaaggagcg acagaagaaa gacaatcaca acctaattga acgacgcagg
     1141 cgattcaaca ttaacgatag gatcaaagag ctgggcaccc tcatccccaa gtccaatgat
     1201 ccggagatgc gctggaacaa gggaaccatc ctgaaggcat ctgtggatta tatccgcaaa
     1261 ttacagaagg aacagcagcg ctctaaagac ctggagagcc ggcagcggtc cctggagcaa
     1321 gccaaccgaa gcctgcagct ccgaattcag gagctggaac tacaggcaca gatccatggt
     1381 ctgccggtcc ctcccaaccc aggactgctc tccctagcca ccagctcggt ctctgacagc
     1441 ctcaagccgg aacaactgga cattgaggag gagggcaggc caagcacaac aacatttcat
     1501 gtgtcagggg ggcctaccca gaatgctcct ccacaacagc ctccggcacc gccttcggat
     1561 acccttctgg acctgcactt tcccagcgac cacttggggg acctggggga ccccttccac
     1621 ctagggctag aggacattct gatggaggag gaggggatgg tgggaggact gtcagggggt
     1681 gccctgtccc cactgcgggc tgcttccgac cccctgcttt cttcagtatc cccggctgtt
     1741 tccaagtcga gcagccggcg cagcagcttc agcatggaag acgagtcctg atcaggcctc
     1801 actcctcccc tcgggcttcc ccacccaggg aaggagaaca agcctggatg agaccctacc
     1861 ctcctgtgac actgtcctgt ccaggagatc tggggaacga ggagttgcaa tcaggcccca
     1921 accctgtact aggccaggag gaggaatcag gtgaggccct gccacttttc cagaggacct
     1981 gccttgtgca ggtatttgtg agggagaagg caggggagaa ctgggaaagg tcagttcatc
     2041 acttgagcat catagcctta ccccttgtcc ctggtcctac tcctgcctcg gtgagggaag
     2101 gaggcaggac aaggtatgcc cctggtcact agggaccctt ataaacctgt ttataaaggt
     2161 ctcccaagga aaggagatgc cagggtgccg ctccattcct tctctgggaa gtgccaggcc
     2221 agcttttcct ggcactggag gaagaaaagt aaaaatagtg tctcacccct ggagggttga
     2281 tccctatccc taccttatga cccctgactt gttctggcaa ggaacagaag taaggatgtg
     2341 atccagccca ttgccctggg ccccatccct tctccatagg aaaagctcag cacaggtatt
     2401 tcaggtagag aggaatgact aggctctgat ctcccacgta gaggctccag ccccagccct
     2461 gacccttagc atcataccgt gcaagcattc cattcagttc ctaagctccc tgtcttaacc
     2521 tgggaccagc ctggaacctg acatatgagg gctctgtgct gaccttattc ttgaggaagg
     2581 gaacagattt cgaaatcttg tggattgaca ttctagacct agatcaagtg agacttagat
     2641 cctcaccctt gagaagatct tgccttttct gccttgaggg ccaatttggg ggagatgata
     2701 gggattagtg tagacccagt ctaggtaccc caatacttcc cttcaagttg tagaaaatgg
     2761 taaagaaagg gcgtgtccag gctgtttatc agtccaggga aaaatagaaa tctccctaaa
     2821 aggcagggac ctgaaggaat ggtggcaaaa gtatattgta tcgctcattt gtttgtgaat
     2881 tttttattga acccacctac tcaaaagcta ggtcaccccg gacctctgtc ccatccacac
     2941 cgttctccat ctgggggact aaccctgttt cagagccagt ccttagagcc agtccctacc
     3001 tactagtccc atccatgcca cctacatcca aggtcttcag ctttaaactg ctggggccag
     3061 gccccaagga gggtttactg aggggtccgt aggtttgact aaaataataa atgctaggcg
     3121 tgtttgatgc gcttttaact ttgg
//
