LOCUS       NM_001025718            2383 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus transcription factor Dp-1 (Tfdp1), mRNA.
ACCESSION   NM_001025718 XM_573946
VERSION     NM_001025718.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Maletzki,C., Huehns,M., Bauer,I., Ripperger,T., Mork,M.M.,
            Vilar,E., Klocking,S., Zettl,H., Prall,F. and Linnebacher,M.
  TITLE     Frameshift mutational target gene analysis identifies similarities
            and differences in constitutional mismatch repair-deficiency and
            Lynch syndrome
  JOURNAL   Mol Carcinog 56 (7), 1753-1764 (2017)
   PUBMED   28218421
REFERENCE   2  (bases 1 to 2383)
  AUTHORS   Okuda,M., Araki,K., Ohtani,K. and Nishimura,Y.
  TITLE     The Interaction Mode of the Acidic Region of the Cell Cycle
            Transcription Factor DP1 with TFIIH
  JOURNAL   J Mol Biol 428 (24 Pt B), 4993-5006 (2016)
   PUBMED   27825926
REFERENCE   3  (bases 1 to 2383)
  AUTHORS   Gong,W., Gohla,R.M., Bowlin,K.M., Koyano-Nakagawa,N., Garry,D.J.
            and Shi,X.
  TITLE     Kelch Repeat and BTB Domain Containing Protein 5 (Kbtbd5) Regulates
            Skeletal Muscle Myogenesis through the E2F1-DP1 Complex
  JOURNAL   J Biol Chem 290 (24), 15350-15361 (2015)
   PUBMED   25940086
REFERENCE   4  (bases 1 to 2383)
  AUTHORS   Zaragoza,K., Begay,V., Schuetz,A., Heinemann,U. and Leutz,A.
  TITLE     Repression of transcriptional activity of C/EBPalpha by
            E2F-dimerization partner complexes
  JOURNAL   Mol Cell Biol 30 (9), 2293-2304 (2010)
   PUBMED   20176812
REFERENCE   5  (bases 1 to 2383)
  AUTHORS   Qiao,H., Di Stefano,L., Tian,C., Li,Y.Y., Yin,Y.H., Qian,X.P.,
            Pang,X.W., Li,Y., McNutt,M.A., Helin,K., Zhang,Y. and Chen,W.F.
  TITLE     Human TFDP3, a novel DP protein, inhibits DNA binding and
            transactivation by E2F
  JOURNAL   J Biol Chem 282 (1), 454-466 (2007)
   PUBMED   17062573
REFERENCE   6  (bases 1 to 2383)
  AUTHORS   Illenye,S. and Heintz,N.H.
  TITLE     Functional analysis of bacterial artificial chromosomes in
            mammalian cells: mouse Cdc6 is associated with the mitotic spindle
            apparatus
  JOURNAL   Genomics 83 (1), 66-75 (2004)
   PUBMED   14667810
REFERENCE   7  (bases 1 to 2383)
  AUTHORS   Hsu,S.I., Yang,C.M., Sim,K.G., Hentschel,D.M., O'Leary,E. and
            Bonventre,J.V.
  TITLE     TRIP-Br: a novel family of PHD zinc finger- and
            bromodomain-interacting proteins that regulate the transcriptional
            activity of E2F-1/DP-1
  JOURNAL   EMBO J 20 (9), 2273-2285 (2001)
   PUBMED   11331592
REFERENCE   8  (bases 1 to 2383)
  AUTHORS   Timchenko,N.A., Wilde,M. and Darlington,G.J.
  TITLE     C/EBPalpha regulates formation of S-phase-specific E2F-p107
            complexes in livers of newborn mice
  JOURNAL   Mol Cell Biol 19 (4), 2936-2945 (1999)
   PUBMED   10082561
REFERENCE   9  (bases 1 to 2383)
  AUTHORS   Beijersbergen,R.L., Carlee,L., Kerkhoven,R.M. and Bernards,R.
  TITLE     Regulation of the retinoblastoma protein-related p107 by G1 cyclin
            complexes
  JOURNAL   Genes Dev 9 (11), 1340-1353 (1995)
   PUBMED   7797074
REFERENCE   10 (bases 1 to 2383)
  AUTHORS   Wu,C.L., Zukerberg,L.R., Ngwu,C., Harlow,E. and Lees,J.A.
  TITLE     In vivo association of E2F and DP family proteins
  JOURNAL   Mol Cell Biol 15 (5), 2536-2546 (1995)
   PUBMED   7739537
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098789.1.
            
            [WARNING] On Mar 17, 2025 this sequence was replaced by
            NM_001025718.2.
            
            On Jul 22, 2005 this sequence version replaced XM_573946.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098789.1, SRR8487230.69034.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMN12840111
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..2383
                     /gene="Tfdp1"
                     /note="transcription factor Dp-1"
                     /db_xref="GeneID:361178"
                     /db_xref="RGD:1560344"
     exon            1..57
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            58..164
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            165..286
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            287..596
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             339..1211
                     /gene="Tfdp1"
                     /codon_start=1
                     /product="transcription factor Dp-1"
                     /protein_id="NP_001020889.1"
                     /db_xref="GeneID:361178"
                     /db_xref="RGD:1560344"
                     /translation="MKVCEKVQRKGTTSYNEVADELVAEFSAADNHILPNESAYDQKN
                     IRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSH
                     LQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDK
                     FEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKVARSLVPKALEPYVTEMA
                     QGSIGGVFVTTTGSTSNGTRLSASDLSNGADGMLATSSNGSQYSGSRVETPVSYVGED
                     DDDDDDFNENDEED"
     exon            597..665
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            666..817
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            818..984
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            985..1063
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..2357
                     /gene="Tfdp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggagggta cgcagttaaa gccttgattt cctggatctg gtaacatggc aaaagatgtg
       61 tggtgtctct tgtggctgtg cacccatcca cagtgaacac actggggaag cagcttttgc
      121 caaaaacctt cggacagtcc aatgtcaata tcacacagca agtggtgatt ggcacgcctc
      181 agagacctgc agcagccaac actattgtgg taggaagccc acacactccc aacactcact
      241 ttgtgtccca gaaccagacg tctgactcct caccttggtc tgctgggaag cggaacagga
      301 aaggtgagaa gaatggcaaa ggcctgcggc atttctccat gaaggtgtgt gagaaggtgc
      361 agaggaaagg gacgacctcc tacaatgagg tggccgacga gctggttgcc gagttcagcg
      421 ccgctgacaa ccacatctta cccaacgagt ccgcctacga ccagaagaac atccggcggc
      481 gtgtgtacga tgccttaaat gtgctgatgg ccatgaacat catctccaag gagaagaagg
      541 agatcaagtg gatcggcctg cccaccaact ctgctcagga gtgccagaac ttagaggtag
      601 agaggcagcg gaggctggag aggatcaaac aaaagcagtc acatctccag gagctcatcc
      661 tgcagcaaat tgccttcaag aacttggtgc agagaaatcg ccaagcggag cagcaggccc
      721 gcaggccacc gcctcccaac tctgtcatcc acttgccctt catcattgtc aacaccagca
      781 ggaagacagt catcgactgc agcatctcca atgacaaatt tgagtatctg ttcaactttg
      841 acaacacgtt tgaaatccac gatgatatcg aggtgctcaa gcgcatgggc atggcctgtg
      901 ggctggagtc gggcagctgc tctgctgaag acctcaaggt ggcgagaagt ctggtaccaa
      961 aagctctaga accgtatgtg acagagatgg ctcagggatc cattggcgga gtatttgtca
     1021 cgacaacagg ttctacatcc aatggcacaa ggctttctgc cagtgatttg agcaatggtg
     1081 cagatgggat gctggccacg agctccaatg ggtctcagta cagcggctcc agggtggaga
     1141 cccctgtgtc ctacgttggg gaggatgacg acgacgacga tgactttaat gagaacgacg
     1201 aggaggattg attactcaac tgtagaccct tctcccctca gtcagcttca ggaaaaacgt
     1261 atagagaaaa gaagcttttg aagtggggct ttccgttctt tctggcctac tcccaagaag
     1321 atgccgccga gttgtggagt tagatatgca gctccaagta aggagtgtgc ccgcggtgtg
     1381 agcgagctgt ggatgtgtcg tgaagccagc gtgctagagc agagcctgta tctacctttt
     1441 aggattttat ggttcctctt tctttctttt ttttgtttat cttctttcct ttctttttta
     1501 agtttgaagc ttgttttgcc cctcaacagt tgttgctggt ttgctgagga ggctgtgctg
     1561 cgcccccacc ggtgacagtg gtaaagcgct gcccgcctcg ggtgtgcggc gcccaggtgg
     1621 tggacagcca ggcgttagga tggattttcc catttgtcaa atcatgcaga gtccagagaa
     1681 caaggcgata gcaaagctcc actgttaacg ctgcgcgcca tacgtctcat gactgttttt
     1741 ccttaaatta tactgactgt ccagttccat caatcaacct tttctcaagc agcagcaaag
     1801 cgagaagtag tgtttcttgt ttgtttgttt tgttttgttt ggaagaagtt tactgccacg
     1861 ctggcgcagc tatggaaatt gtctagaaag tttgcttatg gtaaatttgc ctgatttctt
     1921 acaggctacg tttggaaact ttttattata tagtttacat acttataagt ctatcattta
     1981 aagacgtgta ctgaaacaaa tgttgtattt gtttcataag catcttcctg taatctatta
     2041 taaaattgaa attaaacata gagaatgttt taacagtttt ttaactcaaa atttgtcaat
     2101 catttttaat agttcttttt ttataaaaag aaaaaggaat ttaaggacag gcaatagtct
     2161 cttaaaattt attcacaaga accgttaact gcacagctgc ccttagctgc ctgttctaaa
     2221 tgatggtctt tttattgaaa cacaaataaa cttttctgta atattttatg gaatataaag
     2281 agactttaat tgtttgacct gtttaactaa gcactgttag tttttattaa taaaacgcgc
     2341 atgggcattt taaacaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
