LOCUS       XM_039090553            1208 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transcription factor B2, mitochondrial
            (Tfb2m), transcript variant X5, mRNA.
ACCESSION   XM_039090553
VERSION     XM_039090553.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090553.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1208
                     /gene="Tfb2m"
                     /note="transcription factor B2, mitochondrial; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     85 samples with support for all annotated introns"
                     /db_xref="GeneID:289307"
                     /db_xref="RGD:1307091"
     CDS             175..1026
                     /gene="Tfb2m"
                     /codon_start=1
                     /product="dimethyladenosine transferase 2, mitochondrial
                     isoform X3"
                     /protein_id="XP_038946481.1"
                     /db_xref="GeneID:289307"
                     /db_xref="RGD:1307091"
                     /translation="MRGLAMRLPPRLALSVLAGRGPSCILGSGAATRKDWQERNRRSF
                     SDLYTQPLPDCDFEESSSWTHKSRSEPTRHIACKKSARNLVRDLLEHQNPSHQLILEC
                     NPGPGILTGALLKAGARVVAFESEKMFIPHLESLRKNADGELQVVHCDFFKIDPRYQE
                     LVRPDVNSHTIFQNLGIKAVPWSAGVPIKVFGILPNKHERRLLWKILFDLYSCESIYR
                     YGRVELNMFISEKEFRKLIATPKRPDLYQVLGVLWQVACEIKFLHMVSEVLMPEELCY
                     SGALVVI"
ORIGIN      
        1 gcggaagcga gtgaagaaag caccgaggct aggtcgttcg catgcgccat tcgtaatgtt
       61 tacttccgcc cggcctagtg aggccgtgaa gtatgtgcac gtgtgatgtg gtgctccgtg
      121 ttcttcgcag aggctacact gttaactggt gattggggtg gacattagag gaggatgagg
      181 ggactggcga tgaggctgcc cccgcggctg gcgctgtcag tgttggcggg ccgcggcccg
      241 tcttgcattc tggggtccgg agcggcgacg cggaaggact ggcaagagag gaaccggcgt
      301 agcttctctg acctctacac tcaaccgttg cctgattgtg atttcgagga gtcgtcctcg
      361 tggacacaca agagtcgatc agagcctacg cgtcacatag catgtaagaa atcggccagg
      421 aacctggtac gagacctgct ggagcaccaa aacccatccc atcaacttat actagagtgc
      481 aatccaggtc caggaatcct gactggggca ttacttaaag ctggtgccag agtggttgcc
      541 tttgaaagtg aaaagatgtt tattccacat ttggagtcct taaggaagaa tgcggatgga
      601 gagttacaag tggttcactg tgacttcttt aaaatagatc ctaggtatca ggagctagta
      661 cgaccggatg tgaattcaca cacaattttt cagaacctgg gaataaaagc agttccttgg
      721 tcagcaggtg ttcctataaa agtatttgga attctaccaa ataaacatga aagacgattg
      781 ctttggaaaa tcctgtttga tctgtactcc tgcgaatcta tatacagata tggacgagta
      841 gaactgaata tgttcattag tgaaaaagaa ttccggaaac taatagcaac tcctaaaagg
      901 ccagatttat atcaagtatt gggtgtgctt tggcaagtgg cttgtgaaat taagtttctg
      961 cacatggtga gtgaagtttt aatgccagaa gaactatgtt actcaggagc cttggtcgtc
     1021 atttagtgtg catgccgaaa atgggcactt ggaaaagtca aagcactcgt tccctgagta
     1081 cggttgaccc cattaatata ctaaggcaga taaggaaaag acctggagac acggctgcta
     1141 aaatgtatcc tcacgacttc aaaagacttt ttgaaactat agaacgttca gaagactctg
     1201 tctttaaa
//
