LOCUS       NM_001401661            1739 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transcription factor AP-2 delta (Tfap2d),
            transcript variant 1, mRNA.
ACCESSION   NM_001401661 XM_039083190
VERSION     NM_001401661.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Hesse,K., Vaupel,K., Kurt,S., Buettner,R., Kirfel,J. and Moser,M.
  TITLE     AP-2delta is a crucial transcriptional regulator of the posterior
            midbrain
  JOURNAL   PLoS One 6 (8), e23483 (2011)
   PUBMED   21858141
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Zhao,F., Satoda,M., Licht,J.D., Hayashizaki,Y. and Gelb,B.D.
  TITLE     Cloning and characterization of a novel mouse AP-2 transcription
            factor, AP-2delta, with unique DNA binding and transactivation
            properties
  JOURNAL   J Biol Chem 276 (44), 40755-40760 (2001)
   PUBMED   11522791
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Feb 17, 2022 this sequence version replaced XM_039083190.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN14984019,
                              SAMN14984024 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-269               JAXUCZ010000009.1  29177098-29177366
            270-767             JAXUCZ010000009.1  29178430-29178927
            768-828             JAXUCZ010000009.1  29182376-29182436
            829-994             JAXUCZ010000009.1  29193029-29193194
            995-1113            JAXUCZ010000009.1  29193361-29193479
            1114-1255           JAXUCZ010000009.1  29212851-29212992
            1256-1369           JAXUCZ010000009.1  29217697-29217810
            1370-1739           JAXUCZ010000009.1  29236878-29237247
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q13"
     gene            1..1739
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /note="transcription factor AP-2 delta"
                     /db_xref="GeneID:301284"
                     /db_xref="RGD:1304864"
     exon            1..269
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     CDS             231..1589
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transcription factor AP-2-delta isoform 1"
                     /protein_id="NP_001388590.1"
                     /db_xref="GeneID:301284"
                     /db_xref="RGD:1304864"
                     /translation="MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSS
                     PLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYY
                     QQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQ
                     RLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRL
                     SLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNL
                     PAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTAR
                     KKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAIC
                     AALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEK
                     TD"
     exon            270..767
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     exon            768..828
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     exon            829..994
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1113
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1255
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1369
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1739
                     /gene="Tfap2d"
                     /gene_synonym="Tcfap2d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggagctgc ttttgtgcag agggaaaatt ttgttcctac aggtttttaa gtgggtacga
       61 ggcaaggagc tatctgatcc gggcaaaacc attacagttt agatctctat ctacggaaca
      121 tttttttctt cctttaaaaa aattggaaaa tacaagaagt tttggatttt ttttcctgat
      181 tctttttttg gagggggaaa ttgcatcgta agcttttgga gaaacccaac atgtcaacta
      241 cctttcccgg actagtccac gatgccgaga tacgtcacga cggatcaaac agctaccgtt
      301 tgatgcagct tggctgtctg gagtccgtag ccaattccac ggttgcctat tcctcctcct
      361 ctcctttaac ttactctacc accggcaccg agtttgcgtc cccctacttc tccactaacc
      421 accagtacac cccgctccac caccagtcct tccattacga gttccagcac agccacccgg
      481 cggtcacccc cgacgcctac tctctgaact cgctccacca ctcacaacag tactaccagc
      541 agattcacca cggggagccc accgacttta ttaacctgca caatgcgcgg gctctcaagt
      601 cctcctgcct ggacgagcag aggcgggagc tgggctgcct cgatgcctac cgccgccacg
      661 acctgtccct catgagccat ggctctcagt atggaatgca cccagatcaa agactcctgc
      721 cagggcccag cctggggctg gccgccgcgg gagccgacga cttgcagggt tctgtggaag
      781 cccagtgtgg gattgtcctc aacggccaag ggggtgtgat aagaagaggt ggcacctgtg
      841 tggtcaaccc cacagacttg ttttgctcag ttcctggtcg tttgtccctt ctcagttcta
      901 cttccaaata caaggtgacc attgctgagg taaagaggcg tctctcacca cccgagtgcc
      961 tcaatgcttc acttctggga ggcattctga ggagagcaaa atccaagaat ggtggtcgct
     1021 gcttgagaga gaaactagac aggcttggct taaacttgcc agccggaaga cggaaagcag
     1081 ccaacgttac cttgctcact tccttagtcg aaggagaggc tttgcacttg gctagggatt
     1141 ttggctacac atgcgaaaca gagtttccag ccaaggcagt aggagaacat ctcgccagac
     1201 aacatatgga acagaaagaa cagacagcac ggaaaaagat gatcctagcg accaagcaaa
     1261 tttgtaaaga attccaagac ctcctgagtc aagatagatc accactggga tcctcccgac
     1321 cgactcccat tctagacctt gacatccaga ggcacttaac acatttcagt ttgatcactc
     1381 atggttttgg gacaccagca atatgtgcag ccctaagcac tttccaaaca gtcctcagtg
     1441 agatgcttaa ctacttggaa aaacacacga ctcacaaaaa cggtggtgct gcagactctg
     1501 gccaaggaca tgccaactcg gagaaagccc cgctgcggaa agcttcagag gctgctgtga
     1561 aagagggcaa aacagaaaag acagactagc tacatcaaac agaatctatt tctagagagt
     1621 cttgctgctc atattttttt tctaatatat atatcattgg gggtgactaa tcttcagtgg
     1681 accaaatctt tacccttccc gagccctcca taaaataaag tcaaaagtgg aaatgaaaa
//
