LOCUS       XM_039082508            2527 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus testis expressed 9 (Tex9), transcript
            variant X9, mRNA.
ACCESSION   XM_039082508
VERSION     XM_039082508.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082508.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2527
                     /gene="Tex9"
                     /note="testis expressed 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 long SRA read, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 129
                     samples with support for all annotated introns"
                     /db_xref="GeneID:300822"
                     /db_xref="RGD:1304772"
     CDS             34..735
                     /gene="Tex9"
                     /codon_start=1
                     /product="testis-expressed protein 9 isoform X5"
                     /protein_id="XP_038938436.1"
                     /db_xref="GeneID:300822"
                     /db_xref="RGD:1304772"
                     /translation="MQKAGLGGDRKVCPLARGCPRPENSRGKMCCYHGNRIAPGQVKM
                     AGRSVGVPRRGAAGPQSRGQLAAGRDLLAREQEYKRLNAELEAKTANLVRQAEEVIRE
                     QQEERARPFSALTTSCKEEDGYGPRDLLSSEGMAHPWSETKPKTKNTGPVNKIQNRLH
                     SADKERKINSSVKLKYPDVQTANDVAIPDDFSDFSLAKTISRIEGQLEEDVLPECADD
                     DSFCGVSKDIGTAMP"
ORIGIN      
        1 ttaagggaac ccaggaactg ctggtcaaag cctatgcaaa aagcaggtct aggtggagac
       61 agaaaagtct gtcctctggc tcgaggctgc ccgagacctg agaactctcg cgggaagatg
      121 tgttgttacc atggcaaccg catcgctcca gggcaggtaa agatggccgg tcgaagtgtt
      181 ggagtgccga gacgtggtgc tgcaggtcct cagtcgcgcg gacagcttgc agctggacgg
      241 gaccttctcg ctcgggagca agaatacaag cgtttaaatg cagaattgga ggcaaaaact
      301 gctaatctgg ttcgacaagc tgaggaagta ataagagagc agcaggaaga gcgagctagg
      361 cctttttcag cactgactac gtcatgcaaa gaggaagacg gttacggtcc gagagatctg
      421 ttgtcatctg aagggatggc tcatccatgg tcagaaacca agccaaagac caaaaacact
      481 ggtcctgtaa ataagattca aaacagactc cactctgcag ataaagaaag gaaaataaat
      541 tcaagtgtta aactgaaata tcctgacgtg cagactgcca atgatgtggc cattccagac
      601 gatttctcag acttctccct tgccaagaca attagcagga ttgaagggca gctggaagag
      661 gacgtcttgc cagagtgtgc agacgatgac agcttctgtg gtgttagtaa ggacattggg
      721 acagcaatgc cctaaaatta ctgaagttat gaggagccac ctgtgctgtt ggaacaaaaa
      781 ccagaacaat tggaatgtgt aagcacagtt actgtgaact gtcatttggc tgtgaagtga
      841 atatgggtgt acactacggt tagctgtgac tccaatctgg ctccagtctc ccccctgtga
      901 tagcggttct ccatttggaa gttagagctt gtcaaatgat gtcttaaacc tagcgaatgt
      961 atcataagag gctgccagtg tgtcgttttc aaatatacag tttattgttc acacattgga
     1021 aggggaggac agcaactcac agcacacgaa tctaacagcc taacagccta gctctaaggg
     1081 ctgccgcctt ttacctggag gcgtgactcg ctcagacagt ggcagcagta acacagaata
     1141 ccttgcaggt tcgatagtcc agtccagggc acagcaagcc accatgacta cacccattgg
     1201 tgtagtagga cagtgagggg gttctggctc tgaggcagat ggtcctttgg agcaacgttg
     1261 cttgagctta atacggacca attagtcatg tctcaactgt gcttagccat tcagccaggg
     1321 tgccagtcag tcagtggtcg ccaaggtcag tgaagattcc cttgttgcta ggatacatgg
     1381 cttgtgtgcg ttgagctata ttagagacca acctcttctg agctgtctgg ggcctgggtt
     1441 tctatgttct tctgaagttt gtcccctcct tgcagacatt tggcccgttc tcctgattga
     1501 tgtgggctac ctgctccccg gccattgctt gttccaccag gtgcttgctt ctgctgtcag
     1561 cttgttctga ctgtcaggat gtttagcagg agtgcctcct gtcttatttt tttgttttta
     1621 gttttaagta ttcactatag atgatcagaa agtttaactc tcaaattctg atactggaga
     1681 ctcctaatag gttgtgtgtg tcatgactga gctgcactct agttagtggg aagcagttca
     1741 gttatgcatt tatagcatct actgacctag tcaagcccct ggaactagta gaaggaagaa
     1801 cagtaaatgg ttgttactct tcagatgcct tccagaatgt gctgggcaga tgtttgttcc
     1861 tggagacagt cacccactgc ccagttacag gacagaggtg tagaaatcca ggactactac
     1921 aggctgtacc atgagcagtc cagtaacact gtctcagtac cttcttcagt gtgcttaccc
     1981 aggaagagta tccagacgct tgcttggtgt ggctgggtca tgggtggaaa tgaatggtct
     2041 ggagtcagtt tgggagcaca gaccataaga taggaaactt catttttgtt agagaggatg
     2101 tgtttgtttc tgtcaaattc ttggacattg ccaacctgtg actgctatta attctggttg
     2161 atatattttg gatcactgtg agtccggtct gtaaaagtgc aagaatacta gtttgtaggc
     2221 gtggttctta ggaggaaggg gttgtcttgt cctctgcctt tgctcactct ccatggttga
     2281 tgtgaccacc tgttgctgtt ttttgtattt tgtttcctac atgtggaatg tttaatgtgt
     2341 acagtgttcc tgccatgttc tcctgttaga ctgtctattt tggccatatt ttactcataa
     2401 aatatgacct tttggttatt agtatcttag atttgatttt tttttaaaaa aaaaaagcag
     2461 tcatgtaatg atttgactta acagaggctc agatccgatt tctaaaggcc aagctccatg
     2521 tgatgca
//
