LOCUS       NM_001399268            1425 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus testis expressed 9 (Tex9), mRNA.
ACCESSION   NM_001399268 XM_002729938
VERSION     NM_001399268.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jan 5, 2022 this sequence version replaced XM_002729938.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.773706.1,
                                           SRR26643292.34494.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                JAXUCZ010000008.1  82094447-82094496   c
            51-130              JAXUCZ010000008.1  82094217-82094296   c
            131-194             JAXUCZ010000008.1  82090763-82090826   c
            195-274             JAXUCZ010000008.1  82089044-82089123   c
            275-323             JAXUCZ010000008.1  82082154-82082202   c
            324-406             JAXUCZ010000008.1  82080890-82080972   c
            407-585             JAXUCZ010000008.1  82078762-82078940   c
            586-668             JAXUCZ010000008.1  82076368-82076450   c
            669-842             JAXUCZ010000008.1  82075763-82075936   c
            843-977             JAXUCZ010000008.1  82072009-82072143   c
            978-1112            JAXUCZ010000008.1  82059394-82059528   c
            1113-1425           JAXUCZ010000008.1  82058514-82058826   c
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..1425
                     /gene="Tex9"
                     /note="testis expressed 9"
                     /db_xref="GeneID:300822"
                     /db_xref="RGD:1304772"
     exon            1..50
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1190
                     /gene="Tex9"
                     /note="testis expressed gene 9; testis-expressed sequence
                     9 protein"
                     /codon_start=1
                     /product="testis-expressed protein 9"
                     /protein_id="NP_001386197.1"
                     /db_xref="GeneID:300822"
                     /db_xref="RGD:1304772"
                     /translation="MAGRSVGVPRRGAAGPQSRGQLAAGRDLLAREQEYKRLNAELEA
                     KTANLVRQAEEVIREQQEERARPFSALTTSCKEEDGYGPRDLLSSEGMAHPWSETKPK
                     TKNTGPVNKIQNRLHSADKERKINSSVKLKYPDVQTANDVAIPDDFSDFSLAKTISRI
                     EGQLEEDVLPECADDDSFCGVSKDIGTEAQIRFLKAKLHVMQEELDSVVCECNKKEDE
                     IQDLKSKVKNLEEDCVRQQRTVTSQQTQIEKYRNLFEEANKRCDELQQQLSSVDRELE
                     NKRRLQKQAATSQSATEVRLNRALEEAEKYKAELSKLRQTNKDITNEDHQKIEVLKSE
                     NKKLERQKGELMIGFKKQLKLIDILKRQKMHIEAAKMLSFSEEEFMKALEWGSS"
     exon            51..130
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            131..194
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            195..274
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            275..323
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            324..406
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            407..585
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            586..668
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            669..842
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            843..977
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1112
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1425
                     /gene="Tex9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcatcgctcc agggcaggta aagatggccg gtcgaagtgt tggagtgccg agacgtggtg
       61 ctgcaggtcc tcagtcgcgc ggacagcttg cagctggacg ggaccttctc gctcgggagc
      121 aagaatacaa gcgtttaaat gcagaattgg aggcaaaaac tgctaatctg gttcgacaag
      181 ctgaggaagt aataagagag cagcaggaag agcgagctag gcctttttca gcactgacta
      241 cgtcatgcaa agaggaagac ggttacggtc cgagagatct gttgtcatct gaagggatgg
      301 ctcatccatg gtcagaaacc aagccaaaga ccaaaaacac tggtcctgta aataagattc
      361 aaaacagact ccactctgca gataaagaaa ggaaaataaa ttcaagtgtt aaactgaaat
      421 atcctgacgt gcagactgcc aatgatgtgg ccattccaga cgatttctca gacttctccc
      481 ttgccaagac aattagcagg attgaagggc agctggaaga ggacgtcttg ccagagtgtg
      541 cagacgatga cagcttctgt ggtgttagta aggacattgg gacagaggct cagatccgat
      601 ttctaaaggc caagctccat gtgatgcagg aggagctgga cagcgttgtg tgtgaatgca
      661 ataagaagga ggatgaaatt caggacttaa agtccaaggt gaaaaatttg gaagaagact
      721 gtgtgcgaca acagcgaaca gttacatccc agcaaaccca gatagagaaa tataggaacc
      781 tttttgaaga agcaaataaa agatgtgacg aattacagca acagctgtca tcagtggacc
      841 gggaattaga aaataaaaga agattacaaa aacaggctgc tacaagtcag agtgccacgg
      901 aggtccgcct gaatcgagct cttgaagaag cagaaaaata taaggcggag cttagtaaac
      961 tcaggcaaac taacaaggat attacaaatg aagaccatca aaaaattgaa gtgttgaaat
     1021 cagaaaacaa gaaactagaa agacaaaaag gagaattaat gatagggttc aagaagcagt
     1081 tgaaattaat tgacattttg aaaaggcaga agatgcatat tgaagctgcc aagatgctgt
     1141 ctttcagtga ggaggagttt atgaaggccc ttgagtgggg tagttcatga gtgagcaatt
     1201 tcaatttgat gcttatttgt gttagtttat ttaatattaa attgtagcct tcttgctgtt
     1261 cataagtagt gagaacattt gtgaaataaa tgttcagata atgatctgtt gaaataaaca
     1321 gaattgtttg aaggatgttg taagacaaag ccagactgca actccagcct tacttccttt
     1381 ttcattaata gttgtgaaat aaagaagcaa gactttgact tttaa
//
