LOCUS       NM_001013885             807 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus testis expressed 56 (Tex56p), mRNA.
ACCESSION   NM_001013885 XM_214471
VERSION     NM_001013885.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CK596086.1,
            BF408798.1 and JAXUCZ010000017.1.
            
            On Oct 25, 2007 this sequence version replaced NM_001013885.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079269.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-687               CK596086.1         1-687
            688-694             BF408798.1         158-164             c
            695-775             JAXUCZ010000017.1  30138968-30139048   c
            776-807             JAXUCZ010000017.1  30135241-30135272   c
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p12"
     gene            1..807
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /note="testis expressed 56"
                     /db_xref="GeneID:291077"
                     /db_xref="RGD:1307537"
     exon            1..272
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..757
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /note="uncharacterized protein C6orf201 homolog"
                     /codon_start=1
                     /product="testis expressed protein 56"
                     /protein_id="NP_001013907.1"
                     /db_xref="GeneID:291077"
                     /db_xref="RGD:1307537"
                     /translation="MNVNIDSEQLFTEEKPKDYAQPEVLCHTFELLSNLHKLLPNRTV
                     EVLHSYRSEEDKRKCEKPEFSGIEKILARHQLPKEINLSPKPSHVPSWKRKIINNISG
                     NWKKCRLWQKSIYEPPMGTIIVRWTKKNLQPSEDLKSVIQRLSALGPIISVTPCGRES
                     AVVVFRDAASACKAVSAFQTMSADSMFHCSWQHRFMSKNKTWSRRYPSKIHAEKKEKH
                     P"
     exon            273..471
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /inference="alignment:Splign:2.1.0"
     exon            472..694
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /inference="alignment:Splign:2.1.0"
     exon            695..775
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /inference="alignment:Splign:2.1.0"
     exon            776..807
                     /gene="Tex56p"
                     /gene_synonym="C17h6orf201; RGD1307537; Tex56"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttgggggtgg catcaagctg agatgaagaa gacttgctgt gccagtcacc aggtttcacg
       61 tgatcggctg cctttctctg taacttaaca ggctgtcatg aatgtaaaca tagactccga
      121 acaactcttt actgaagaaa agccaaaaga ttatgcccag cctgaagtct tgtgtcacac
      181 ctttgaactt ctctctaacc ttcacaagtt gctcccaaat cgtacggtgg aagtgcttca
      241 ttcctacaga agtgaagagg acaagagaaa atgtgagaag cctgaattct ctggcataga
      301 aaagatctta gcaagacatc agttgccaaa agagattaat ctgtccccaa agccaagcca
      361 tgtgccctca tggaaaagaa aaataatcaa caatatcagt ggcaactgga agaaatgtcg
      421 cctgtggcag aaaagcatct atgagccgcc catgggcacc atcattgtca ggtggaccaa
      481 aaagaacttg caaccctcag aggacctcaa gtcagtgatc caaagactgt cagcacttgg
      541 cccaattatc tcagtcactc cttgtggccg ggaaagtgct gtcgtggtgt tcagagatgc
      601 ggcctcagct tgtaaggctg tgagtgcttt tcagaccatg tctgcagact caatgttcca
      661 ctgctcatgg cagcatcgat tcatgtcaaa aaataaaact tggtcaagaa gatatccttc
      721 aaaaatacac gcagaaaaaa aagaaaagca tccatagcta aggagccata aacagccgtt
      781 gtgtatctgc tatgtgcagg gctctgg
//
