LOCUS       XM_002729430            1140 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus testis expressed 52 (Tex52),
            transcript variant X1, mRNA.
ACCESSION   XM_002729430
VERSION     XM_002729430.6
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 24, 2024 this sequence was replaced by
            NM_001431952.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729430.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1140
                     /gene="Tex52"
                     /note="testis expressed 52; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 15 long SRA reads, 3 Proteins"
                     /db_xref="GeneID:100362909"
                     /db_xref="RGD:2323784"
     CDS             51..977
                     /gene="Tex52"
                     /codon_start=1
                     /product="testis-expressed protein 52 isoform X1"
                     /protein_id="XP_002729476.1"
                     /db_xref="GeneID:100362909"
                     /db_xref="RGD:2323784"
                     /translation="MANSPKKTSLQKRDLSHVSPTREPFLKMIHAREFFPTYQTWTQR
                     EFLLPKETGKFPGFTQQSYHKLAGKQPPWTELKSKVHHRLFYPWKDAVEHTWGFHTWL
                     DVGRLPATFPTRPDVPYDSNVWRYLTHSSAYRLPAAKPGIPPPSWMGPHSFLSFINAT
                     PIFVDMNRKKQIIVRTVKELKEIEKLKLRSELRAPPLDAHGNILPPPNFKKSQYISTG
                     GRLVPWGLQFLPNPLPNNFSKNWPCPNLQPHYQETILKLARLPTVPLSEDLVKDYQAL
                     IKNRLAIPVHYLSKAGPAKTSEGRRKRRPGHV"
     polyA_site      1140
                     /gene="Tex52"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agggcttgcc tccaaagcct cctctcctgg ctctgtggct cagaagaaaa atggccaaca
       61 gcccgaagaa aacatccctc cagaagcgag acctgagcca tgtatctcct accagggaac
      121 ctttcctgaa gatgatccat gccagagaat tcttcccaac ctatcagact tggactcagc
      181 gtgagttcct cctccccaaa gagaccggga agttcccggg cttcacccag caaagctacc
      241 acaagctggc cgggaaacag ccaccatgga cagagttgaa gtctaaggtg catcaccggt
      301 tattctatcc ttggaaggat gcagtcgagc acacctgggg cttccacaca tggcttgatg
      361 tgggacgttt gcctgctacc ttccccacta gaccagacgt accctatgac agcaatgtct
      421 ggcgctattt gactcactcc agtgcttacc gcctccctgc cgcaaagcct ggcattcctc
      481 caccctcctg gatgggccca catagcttcc tgtccttcat caatgctacc cccatcttcg
      541 tggacatgaa cagaaagaag cagataattg tgagaacagt gaaggagctg aaggaaattg
      601 agaaactcaa gctgaggagc gaactaaggg cccctccgct cgatgcccat ggcaatatcc
      661 tacctccacc aaacttcaag aagtcccagt acatatctac tggtggaagg cttgttcctt
      721 ggggcctcca gttcctaccc aacccacttc ccaataattt cagcaagaac tggccctgcc
      781 caaatcttca acctcattac caggagacga tcctgaaact ggctcgactg cccactgtac
      841 ccctgagcga agaccttgtg aaggactacc aagccctgat taaaaaccgg ttggccatac
      901 cggtccacta cctatccaag gcaggaccag ctaaaacatc agagggaagg aggaaaagga
      961 gacctggaca tgtctgaaag aagagtccat agtgggcctt agggtttgca gcctagcctt
     1021 cttcagccaa gagactccag gagactaagg actctgggcc taaagaataa cctttccacc
     1081 agcctccagc ctcttgtcac ctctgtatca ggcttctgga gatgttactg aagctctgaa
//
