LOCUS       NM_001395634            1173 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus testis expressed 30 (Tex30), mRNA.
ACCESSION   NM_001395634 NM_001106909 XM_039083268
VERSION     NM_001395634.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1173)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Aug 3, 2021 this sequence version replaced
            NM_001106909.1, XM_039083268.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ232543.1, FQ230685.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAXUCZ010000009.1  53744148-53744317   c
            171-244             JAXUCZ010000009.1  53740998-53741071   c
            245-475             JAXUCZ010000009.1  53740324-53740554   c
            476-527             JAXUCZ010000009.1  53737624-53737675   c
            528-733             JAXUCZ010000009.1  53736966-53737171   c
            734-1173            JAXUCZ010000009.1  53735512-53735951   c
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q22"
     gene            1..1173
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /note="testis expressed 30"
                     /db_xref="GeneID:301381"
                     /db_xref="RGD:1309095"
     exon            1..170
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /inference="alignment:Splign:2.1.0"
     exon            171..244
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /inference="alignment:Splign:2.1.0"
     CDS             230..913
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /note="testis-expressed sequence 30 protein"
                     /codon_start=1
                     /product="testis-expressed protein 30"
                     /protein_id="NP_001382563.1"
                     /db_xref="GeneID:301381"
                     /db_xref="RGD:1309095"
                     /translation="MSHTEVKLKIPFGNKLLDAVCLVPNKNIAYGIILTHGASGDMNL
                     PHLMSLASHLASHGFFCLRFTCKGLNIVHRIKAYKAVLNYLKTSGEYKLAGVFLGGRS
                     MGSRAAASVMCHTELDDADDFVRGLICISYPLHHPKQQHKLRDEDLFRIKDPVLFVSG
                     SADEMCEKNLLEKVAQKMQAPSKIHWIEKANHSMAVKGRSTNDVFKEINTQILFWIQE
                     ITEMDKKCH"
     exon            245..475
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /inference="alignment:Splign:2.1.0"
     exon            476..527
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /inference="alignment:Splign:2.1.0"
     exon            528..733
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /inference="alignment:Splign:2.1.0"
     exon            734..1173
                     /gene="Tex30"
                     /gene_synonym="RGD1309095"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtagcggg ccgcgctgaa gggggcggct aggcggtcgc ttcgagcgtg ttagttagct
       61 ccctgaagag agtgagggcg gttgggcgct ggcggtcact cgtgcgttcg ctggtaagcg
      121 cggcggcggc ggcggcggcg gcgggaagtg gagcggcggt gccgaaccag ggagatgccc
      181 tttgcttctc agatgtaatg caccttgtgt ttattattca acagtgaaaa tgagtcacac
      241 agaggttaaa ttaaaaatac cttttggaaa taaattactg gatgccgttt gtttggtacc
      301 taacaagaac atagcatatg gaataattct tacacatgga gcatcaggag atatgaatct
      361 tcctcatttg atgtcactgg catcccatct tgcatctcac gggttttttt gcctgagatt
      421 tacttgcaaa ggccttaata ttgtacatag aattaaggca tataaagcag ttttgaatta
      481 cctgaagacc tccggagaat acaaacttgc aggtgttttt cttggaggtc gttcaatggg
      541 ctcaagagca gctgcttctg taatgtgtca tactgagcta gacgatgccg atgattttgt
      601 tcgaggtctc atttgtattt cttacccact gcaccatcca aagcagcagc ataaactcag
      661 agatgaagat ctctttcgca taaaggatcc tgtactgttt gtgtcaggct cagcagatga
      721 aatgtgtgaa aagaacttgt tggagaaagt agcacagaaa atgcaagccc ccagtaaaat
      781 tcattggatt gagaaggcaa atcattctat ggcagtgaaa ggacggtcaa caaatgatgt
      841 attcaaagaa ataaacactc aaatcttgtt ttggatccaa gaaatcactg aaatggacaa
      901 gaaatgtcat taaaagccat gttttgaata aaagtacggt tggttaattt gataaagtac
      961 acctctcagc attgtgagat gtatttcaga ctaatgttct ttaatgttgc cctatttttg
     1021 aaacattgta tcgtgaaaat atcctttaca agatgtcttt tgaaagcact gttacagtta
     1081 tatgaagata atgtacaaat attgaaggtt gtctataatt tatttttatt agtatagtta
     1141 agttttgaaa aattaaacat ttgcattttg tta
//
