LOCUS       NM_001017508            1752 bp    mRNA    linear   ROD 05-OCT-2024
DEFINITION  Rattus norvegicus testis expressed 29 (Tex29), transcript variant
            1, mRNA.
ACCESSION   NM_001017508 XM_573947
VERSION     NM_001017508.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Dec 20, 2022 this sequence version replaced NM_001017508.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079268.1, SRR26360181.594622.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               JAXUCZ010000016.1  84366130-84366273   c
            145-227             JAXUCZ010000016.1  84365919-84366001   c
            228-321             JAXUCZ010000016.1  84365714-84365807   c
            322-432             JAXUCZ010000016.1  84360488-84360598   c
            433-502             JAXUCZ010000016.1  84354763-84354832   c
            503-1752            JAXUCZ010000016.1  84352574-84353823   c
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..1752
                     /gene="Tex29"
                     /note="testis expressed 29"
                     /db_xref="GeneID:498664"
                     /db_xref="RGD:1565377"
     exon            1..144
                     /gene="Tex29"
                     /inference="alignment:Splign:2.1.0"
     exon            145..227
                     /gene="Tex29"
                     /inference="alignment:Splign:2.1.0"
     exon            228..321
                     /gene="Tex29"
                     /inference="alignment:Splign:2.1.0"
     CDS             264..812
                     /gene="Tex29"
                     /note="testis-expressed sequence 29 protein;
                     uncharacterized protein C13orf16 homolog"
                     /codon_start=1
                     /product="testis-expressed protein 29"
                     /protein_id="NP_001017508.1"
                     /db_xref="GeneID:498664"
                     /db_xref="RGD:1565377"
                     /translation="MRYTTDIKKSPPQLLKTFAVCDISLYDICDYNVTRDQCKELGCC
                     FYKGVCYKKVVPIYVQMFSTLIVLVTGIIIITIIYRIVQEIKRQMKLSMNSTPKASKK
                     RSAFRPFSRDPSRAPSRSPSRTSSTLSSRSPTTAPTTAPTTDPATDPATDPATDPATD
                     PATDPATDPATAPPTDPSENPP"
     exon            322..432
                     /gene="Tex29"
                     /inference="alignment:Splign:2.1.0"
     exon            433..502
                     /gene="Tex29"
                     /inference="alignment:Splign:2.1.0"
     exon            503..1752
                     /gene="Tex29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgcttttct cctgcctccc tcacagctac ccgtgaacca tagatgagga ggtagccagt
       61 ttaatgttta atcaaaacat tgttcctact tagaggctac cagagaggca gtacagagga
      121 ctcagctccg gaaaggatgg acaggtgtga acgctctgag gcccccgtgt gctgaggagt
      181 cctgcgctat cttctagatg tacaaatcct gtactccctg tgctgaggca tttttgatcc
      241 tcacatccct gtcagctgct accatgagat acaccacaga catcaagaag tccccaccac
      301 agctcctgaa gacgttcgca gtttgtgaca tctctctgta tgacatctgt gactacaacg
      361 tcaccaggga ccagtgcaag gagctcggat gctgtttcta caagggcgtc tgctacaaga
      421 aggttgtccc catttacgtg cagatgttct ccaccctgat tgtgcttgtg accgggatca
      481 tcatcatcac catcatttac aggattgtac aggagattaa aagacagatg aagctctcca
      541 tgaactccac ccctaaggca tctaagaaac gatcggcatt taggcctttc tctagagacc
      601 cctctagagc cccctctaga tccccctcta gaacttcttc tacattgtcc tctagaagcc
      661 ccactacagc acccactaca gcccccacta ccgaccccgc tacagacccc gctacagacc
      721 ccgctacaga ccctgctaca gaccccgcta cagaccccgc tacagacccc gctacagccc
      781 ctcctacaga cccctctgaa aaccctccat gaagaagact gaggggcaag tagaaggtag
      841 gctggtgtga atggtgtctg tttctattct tgtggcatat gttcactgtc tttgatggcc
      901 ctcaacagga atggcaaaca ctgttataga ctaggattcc aatgtccccg actgtggagg
      961 gtcaggtcca caagaagact cctccttcct ttcctacctt gcttggctgg gtcagtgcaa
     1021 gtcctgggaa cagtccagta acaccttcac ttttatcggt gtcctccctt gaagccactg
     1081 cagagtgagt gtggccgttg tcatttgagg caatggctga agcgacagca gttcactgcc
     1141 tgctctggct caagggaggc aaagtcattt gcttgtcagt gactcccaga gggctgtgca
     1201 gaccctcttg ctgcttttcc tggcccagaa caaggtccag attagagaaa aggatgtccc
     1261 aaaggcggca tcttgttgtg ggatgtggga tggggaaaga tctgtcttgt cttaacattc
     1321 atgctcaagc ctttggcttc atggaagccc caagggcaag tgggattgga ggagcctttc
     1381 ctgctagtct ggggatctaa gacttcctgc aggacacaag cttatctttt ccttggtgcc
     1441 tcctgggttg acaggggata cgaaggcctc ctcctgaggc ttcagtcctc ttgatgtatt
     1501 gggaaacaac aggcctctca ccaattgact tctaagaaaa cgctcgttat atgtttattt
     1561 tactctgagc cattgcaaac atctcctaag ggtgctacat gtctcatcag agaaacactc
     1621 agacccatcc ctccaccccc cttgtaatct agccccaacg accaacagtg gcagtgccgc
     1681 gtcccggtga gcaccttcag tgtgtgagac agagagcatc tgtgaggaaa aaaaataaaa
     1741 gcattttctt ga
//
