LOCUS       XM_039109998            2728 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus telomerase reverse transcriptase
            (Tert), transcript variant X6, mRNA.
ACCESSION   XM_039109998
VERSION     XM_039109998.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109998.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2728
                     /gene="Tert"
                     /note="telomerase reverse transcriptase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 8 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:301965"
                     /db_xref="RGD:70494"
     CDS             697..2556
                     /gene="Tert"
                     /codon_start=1
                     /product="telomerase reverse transcriptase isoform X5"
                     /protein_id="XP_038965926.1"
                     /db_xref="GeneID:301965"
                     /db_xref="RGD:70494"
                     /translation="MPRAPRCPAVRSLLRSRYREVWPLATFVRRLGLEGSRLVQPGDP
                     KVFRTLVAQCLVCVPWGSQPPPADLSFHQVGLQVSSLKELVSRVVQKLCERGERNVLA
                     FGFALLNGARGGPPMAFTTSVHSYLPNSVTESLCVSGAWMLLLSRVGDDLLVYLLSHC
                     ALYLLVPPSCAYQVCGSPLYQICATTDTWSSVPAGYRPTRPVGGNFTNLGSAHQIKNS
                     GHQEAPKPQALPSRGTKRLLSLTSTNVPSAKKARFEPALRVDKGPHRQVVPTPSGKTW
                     APSPAASPKVPPAAKNLSLKGKASDPSLSGSVCCKHKPSSSSLLSSPPQDAEKLRPFT
                     ETRHFLYSRGGGQEELNPSFLLNSLPPSLTGARRLVEIIFLGSRPRTSGPFCRTRRLP
                     RRYWQMRPLFQQLLMNHAKCQYVRFLRSHCRFRTANQRVPDAMDTSPSHLTSLLRLHS
                     SPWQVYGFLRACLRELVPAGLWGTRHNERRFLKNVKKFISLGKYAKLSLQELMWRVKV
                     EDCHWLRSSPACTSFWDSPSPSQVSFIFITAGKPSFPWIRRPLRYLETHRVELTHPAW
                     QEGHCPCRRAPSEGEDPCHVPVLANGHICGTAAEVILLHHRDHVPEEPPFLLP"
ORIGIN      
        1 tggctgtgtg caaactcaag cgccctcccc tagaggccct ggcctcgctc tggtgcccta
       61 gggtgaagga cactggagag aagctaaagc aagactttct tcacctagtc cgcttccttt
      121 ggaacatatt tgggatctga gtgtgtgata gtaccacaat aaagccttaa gaacctatac
      181 aatagaatcc cggttgtaat catgaagcct ggttgggaaa aactgcgact gccactacct
      241 cactcactca ctgtcgatgt caaccacagc aggcagcagc ggcccgctcg gggagtggca
      301 aagccttagg tccctccgcc tacctaatct tcaataggtc aaggatgggc ttctttgctt
      361 gcccagagaa aagggagccc gagaagcatt ctgtagagag aagccctgca tgactgcgcc
      421 tcccttcgtt atttctacac ttccgccaac cactgaactt ggctgggaac acacctggtc
      481 agtagtccca agcaccagct gtgggaccat cacacagctg cgtccccgcc ccttccgcta
      541 caacgcttaa ttctcttggg tcccgcccct tcctccgttc ccggcctcct ctttttccgc
      601 cgcgggctct caatggctgg gattctgacg attttctaag cacacccctg cgccttggtt
      661 cccgcacgtg ggaggttcat cccgacctag agcacgatgc cccgcgctcc tcgttgcccc
      721 gccgtgcgct ctctactgcg cagccgatat cgggaggtgt ggccgctggc gacctttgtg
      781 cggcgcctgg ggcttgaggg cagtcggctt gtgcaacccg gggacccgaa ggtcttccgc
      841 acgttggttg cccagtgcct agtgtgcgtg ccctggggct cacagccgcc acctgctgac
      901 ctttccttcc accaggtggg cctccaggtg tcatccctga aagagctggt gtccagggtt
      961 gtgcagaaac tttgcgagcg cggtgagagg aatgtgctgg cttttggctt tgcactgctt
     1021 aacggggcca gaggtgggcc tcccatggcc ttcacgacca gcgtgcatag ctacttgccc
     1081 aactcggtta ctgagtccct gtgtgtcagt ggtgcatgga tgctactgtt gagccgagtg
     1141 ggcgacgacc tgctggtcta cctgctgtcg cactgtgcgc tctacctgct ggtgcccccc
     1201 agctgtgcct accaggtgtg cgggtcaccc ctgtaccaaa tttgtgccac cacggatacc
     1261 tggtcctctg tgcccgctgg ttacaggccc actcgacccg tgggcgggaa tttcactaac
     1321 cttgggtccg cacaccagat caaaaacagt ggtcaccagg aagcaccaaa accccaggcc
     1381 ttgccatcac gaggtacgaa gaggcttctg agtctcacca gtacaaacgt gccttcagct
     1441 aagaaggcca ggtttgaacc tgccctgaga gtggataagg gaccccacag gcaggtggta
     1501 ccaaccccat caggcaaaac atgggcgcca agtcctgctg cgtcccccaa ggtgcctcct
     1561 gcagcgaaaa acttgtcttt gaaaggaaag gcatctgacc cgagtctctc tgggtcggtg
     1621 tgctgtaaac acaagcccag ctcctcgtcc ctgctgtcat caccacccca agatgctgaa
     1681 aagctcaggc cattcactga gaccagacat ttcctttact ccaggggagg tggccaagag
     1741 gagctaaatc cctcattcct actcaacagc ctcccgccta gcttgaccgg ggccaggaga
     1801 ctggtggaga tcatctttct gggctcaagg cctaggacat caggaccatt ctgcaggacc
     1861 cgccgcctgc cccgtcgata ctggcagatg cgacccctat tccagcagct gctcatgaac
     1921 cacgcaaagt gccaatatgt cagattcctc cggtcgcact gcagatttcg aacagcaaac
     1981 cagcgggtgc cggatgccat ggacaccagc ccatcccacc tcacgagttt gctccggtta
     2041 cacagcagcc cctggcaggt atacggcttt cttcgggcct gcctccgcga gctggtgcct
     2101 gccggtctct ggggcaccag gcacaatgag cgccgcttct taaagaacgt gaagaagttc
     2161 atctcgttgg ggaagtacgc caagctatcc ctgcaggaac tgatgtggag ggtgaaagtg
     2221 gaggactgcc actggctccg cagcagccca gcttgtacct ccttctggga ttccccttct
     2281 ccttcacaag tttccttcat attcatcact gctggtaaac cctcctttcc ctggataagg
     2341 aggcccctgc ggtatctgga gacacacaga gtggagctca cacatccagc atggcaagaa
     2401 ggacactgtc cctgccgcag agcaccgtct gagggagagg atccttgcca tgttcctgtt
     2461 ctggctaatg gacacatatg tggtacagct gctgaggtca ttcttctaca tcacagagac
     2521 cacgttccag aagaaccgcc ttttcttcta ccgtaagagt gtgtggagca agctgcagag
     2581 cattggaatc aggcaacagc ttgagagagt tcagctacgg gaactgtcac aagaggaggt
     2641 caagcatcac caggacactt ggctggccat gcctatctgc agattgcgct tcatccccaa
     2701 gctcaatggt ctccggccca ttgtgaac
//
