LOCUS       NM_001107907            1724 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus terminal nucleotidyltransferase 5B (Tent5b),
            mRNA.
ACCESSION   NM_001107907 XM_001065098 XM_232748
VERSION     NM_001107907.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1724)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158863.1.
            
            On Jan 27, 2008 this sequence version replaced NM_001107907.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158863.1, DN933876.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1724
                     /gene="Tent5b"
                     /gene_synonym="Fam46b; RGD1308967"
                     /note="terminal nucleotidyltransferase 5B"
                     /db_xref="GeneID:313019"
                     /db_xref="RGD:1308967"
     exon            1..418
                     /gene="Tent5b"
                     /gene_synonym="Fam46b; RGD1308967"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..1438
                     /gene="Tent5b"
                     /gene_synonym="Fam46b; RGD1308967"
                     /EC_number="2.7.7.19"
                     /note="Protein FAM46B; putative nucleotidyltransferase
                     FAM46B; family with sequence similarity 46, member B;
                     non-canonical poly(A) polymerase FAM46B"
                     /codon_start=1
                     /product="terminal nucleotidyltransferase 5B"
                     /protein_id="NP_001101377.1"
                     /db_xref="GeneID:313019"
                     /db_xref="RGD:1308967"
                     /translation="MMPSESGDESLEQPAAQVGTGAASAVATAGAAGGGPDLEASSAS
                     LGRHQSRLSWPQVKRLDALLKEPIPIHGRGNFPTLSVQPQQIVQVVRSSLEEQGLHVH
                     SVRLHGSAASHVLHPESGLGYKDLDLVFQMDLQSEASFQLTKAVVLACLLDFLPAGVS
                     RAKITPLTLKEAYVQKLVKVCTDLDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDS
                     FQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFAEALEHLQHRVIATRSPEEIRG
                     GGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDPVEQRRILERYLEAHFGGA
                     EAARRYACLVTLHRVVNESTVCLMSHERRQTLDLITMLALQALAEQGPAAMAALAWRR
                     PGSDGVVPATVNYYVTPMQPLLPRAHSYPTWLPCN"
     exon            419..1714
                     /gene="Tent5b"
                     /gene_synonym="Fam46b; RGD1308967"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttagtcctc ccagcggtcg gagttgttcc ctgggtttgc ctcgccgccg ccgggtcccc
       61 gcaccccgcc ttggcccgtg cacagccact ctccctgccc tcctcgcctt caccattccc
      121 gggtctctgc cgtcgaggca ccggggccgg gtgaatgatg ccgtcggaga gtggagatga
      181 gagcctggag cagccagctg cgcaggtggg gaccggtgca gcctcggcag tggccacggc
      241 tggggcggcc ggcggcggcc cggacctgga ggcctcctcg gcctctctgg gacggcacca
      301 gagccgactg agctggccac aggtgaagcg gctggacgcg ctgctcaaag agcccatccc
      361 cattcacggg cgaggcaact tccccacgct gagcgtgcaa ccccagcaga ttgtacaggt
      421 agttcgcagt agcttggaag aacagggact gcatgtccat agcgtgcgct tgcacggctc
      481 agctgcgagc cacgtgctgc acccggagag tggcctaggc tacaaggacc tggacctggt
      541 gttccagatg gacctgcaga gtgaggcatc cttccagctg accaaggctg tggtcctggc
      601 ttgcctgctg gacttcctgc ctgcgggagt gagccgggcc aagataacgc cgctgacact
      661 caaggaggcc tatgtgcaga aactggtgaa agtgtgcaca gacctggacc gctggagcct
      721 catctcactg tccaacaaga gcggcaagaa tgtggaactc aagttcgtgg actccgtgag
      781 gcgccagttc gaattcagca tcgactcctt tcagatcatc ctggactcgc tgctcctctt
      841 tggccagtgc tcatccacac caatgtcgga ggccttccac cctacggtga ctggtgagag
      901 cctgtatggg gacttcgcgg aggccttgga gcacctgcag caccgcgtca ttgccacacg
      961 cagccccgag gagatccgag gtggcggcct cctcaaatac tgccacctcc tggtacgggg
     1021 tttccggcca aggcccagca ctgatgttcg cgccctacag agatatatgt gttcccgttt
     1081 cttcatcgac tttccagacc cggtggaaca gaggcgcatt ctggagcgct acctggaggc
     1141 ccacttcggc ggagcagaag cagcccgccg gtatgcttgc cttgtgacac tgcaccgggt
     1201 ggtcaacgag agcacagtgt gcctcatgag ccacgagcgc cgccagaccc tggaccttat
     1261 taccatgcta gccctccagg cactagcgga gcagggccct gctgccatgg ctgccctggc
     1321 ctggcgacgt cctggctcag atggggttgt accagccacc gttaattact atgtgacccc
     1381 catgcagcct ctgctgcccc gcgctcactc ctatcctacc tggctgcctt gcaactgact
     1441 ctgatcctgg ccagaaggga acgagcttcc tgggtggggt ggggtcatca ggtatgtgtt
     1501 gaggatggaa ccagacacag gccacctgtg ccagctggcc cggcactata gggttgggcc
     1561 ttcgaacaga ccagattttc ctgcactagg cccctgtgga cttaaagcca agtcagggtt
     1621 cttgacagaa ggtccccttg gtcatcacac tacactcttg gacctgcata actgtgggga
     1681 cacagaggat acttgccttg agaaaaaaaa aaaaaaaaaa aaaa
//
