LOCUS       NM_001106844            2474 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus terminal nucleotidyltransferase 5A (Tent5a),
            mRNA.
ACCESSION   NM_001106844 XM_001063356 XM_217218
VERSION     NM_001106844.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Etokebe,G.E., Zienolddiny,S., Kupanovac,Z., Enersen,M., Balen,S.,
            Flego,V., Bulat-Kardum,L., Radojcic-Badovinac,A., Skaug,V.,
            Bakke,P., Haugen,A. and Dembic,Z.
  TITLE     Association of the FAM46A gene VNTRs and BAG6 rs3117582 SNP with
            non small cell lung cancer (NSCLC) in Croatian and Norwegian
            populations
  JOURNAL   PLoS One 10 (4), e0122651 (2015)
   PUBMED   25884493
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Etokebe,G.E., Jotanovic,Z., Mihelic,R., Mulac-Jericevic,B.,
            Nikolic,T., Balen,S., Sestan,B. and Dembic,Z.
  TITLE     Susceptibility to large-joint osteoarthritis (hip and knee) is
            associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the
            second exon of the FAM46A gene on chromosome 6
  JOURNAL   J Orthop Res 33 (1), 56-62 (2015)
   PUBMED   25231575
REFERENCE   3  (bases 1 to 2474)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   4  (bases 1 to 2474)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 2474)
  AUTHORS   Antoni,G., Oudot-Mellakh,T., Dimitromanolakis,A., Germain,M.,
            Cohen,W., Wells,P., Lathrop,M., Gagnon,F., Morange,P.E. and
            Tregouet,D.A.
  TITLE     Combined analysis of three genome-wide association studies on vWF
            and FVIII plasma levels
  JOURNAL   BMC Med Genet 12, 102 (2011)
   PUBMED   21810271
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473954.2.
            
            [WARNING] On Mar 13, 2025 this sequence was replaced by
            NM_001106844.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001063356.1, XM_217218.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMEA5760393 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..2474
                     /gene="Tent5a"
                     /gene_synonym="Fam46a; RGD1311381"
                     /note="terminal nucleotidyltransferase 5A"
                     /db_xref="GeneID:300870"
                     /db_xref="RGD:1311381"
     exon            1..306
                     /gene="Tent5a"
                     /gene_synonym="Fam46a; RGD1311381"
                     /inference="alignment:Splign:2.1.0"
     CDS             287..1627
                     /gene="Tent5a"
                     /gene_synonym="Fam46a; RGD1311381"
                     /EC_number="2.7.7.19"
                     /note="family with sequence similarity 46, member A"
                     /codon_start=1
                     /product="terminal nucleotidyltransferase 5A"
                     /protein_id="NP_001100314.1"
                     /db_xref="GeneID:300870"
                     /db_xref="RGD:1311381"
                     /translation="MHQRYFWTDQGQVAFGGHYMAESEGYFAMAEDELTGGPYIPLGG
                     DFGGGGSFGDRCSDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPS
                     LIVKVVRRRLEEKSIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEEEFQT
                     VKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNV
                     ELKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDFHEAF
                     DHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFRPASEEIKTLQRYMCSRFFIDFSDIG
                     EQQRKLESYLQNHFVGLEDRKYDYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRV
                     LADQNVIPNVANVTCYYQPAPYVADANFSNYYIAQVQPVFTCQQQTYSTWLPCN"
     exon            307..850
                     /gene="Tent5a"
                     /gene_synonym="Fam46a; RGD1311381"
                     /inference="alignment:Splign:2.1.0"
     exon            851..2474
                     /gene="Tent5a"
                     /gene_synonym="Fam46a; RGD1311381"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aactgctaaa gctccagaga cgcgagtgtg cgcggtggca tcggcggcgt cgagagccgc
       61 cacctccgag accaccgcag cgggggcgcg ggcggggcgc gggcaagggg cgggaacgct
      121 cagggcgcgg cgggggtcgg cgcagagaag tctcgggccg ctgccccgag cgcactcgca
      181 gttcctgcga agtgtgtccg cctcgcggtt cctcgctcgc ctgcgctcct agaaggggcg
      241 gccgcctcca ggtgacacag acgggactct cgcttgtgct ttccagatgc atcagagata
      301 cttttggact gaccaaggcc aagtggcgtt cggcgggcac tacatggctg agagcgaagg
      361 gtactttgcc atggcagagg acgagctgac cggcggcccc tacatccctc tgggtggtga
      421 cttcggcggc ggtggcagct tcggcgaccg ctgctcggac tattgcgaaa gccccacggc
      481 gcactgcaac gtgctgaact gggagcaagt gcagcggttg gacggcattt tgagcgagac
      541 catcccgatc cacggtcgcg gcaacttccc cacgctcgag ctgcagccga gcctgattgt
      601 gaaggtggtg cggaggcgcc tggaggagaa gagcataggt gtccgcgacg tgcgcctcaa
      661 cggctcggcc gccagtcacg tcctgcacca agacagcggc ctgggctaca aggatctgga
      721 cctcatcttc tgcgccgacc tgcgtgggga agaagagttt cagactgtga aggacgtcgt
      781 gctggattgc ctgttagact tcttgcccga aggggtgaac aaggagaaga tcacgccgct
      841 cactctcaag gaagcgtatg tgcagaaaat ggttaaagtg tgcaatgatt ctgaccggtg
      901 gagccttata tccctgtcaa acaacagcgg caaaaatgtg gagctgaagt ttgtggattc
      961 cctccggagg cagtttgaat tcagtgtaga ttcttttcaa atcaaattag actctcttct
     1021 cctcttttac gagtgttcag agaacccaat gaccgagaca tttcacccca ccataatcgg
     1081 cgagagtgtc tacggtgatt tccacgaagc cttcgatcac ctttgcaaca agatcattgc
     1141 caccagaaac cccgaggaaa taagaggagg aggcctgctt aagtactgca acctcttagt
     1201 gcggggcttc aggcctgcct ctgaggagat caagaccctt cagaggtaca tgtgttccag
     1261 gttctttatt gacttctcag acatcggaga gcagcagaga aagctggaat cctacttgca
     1321 gaaccacttc gtgggcttgg aagaccgcaa gtatgactat ctcatgaccc tccacggagt
     1381 ggtaaacgag agtacggtgt gcctgatggg acatgagaga aggcagactt taaaccttat
     1441 caccatgctg gcaatccggg tgctagctga ccaaaatgtc attcctaatg tggctaatgt
     1501 cacttgctat taccagccgg ccccctatgt cgcagatgct aactttagca attactacat
     1561 cgcacaggtt cagccagtat tcacatgcca gcagcagacg tattctactt ggttaccctg
     1621 caattaagaa tcatttaaaa atgtcccatg gggaagccat ttcaaagata gtaaaatgaa
     1681 aaaaaaaagg aagaaaaatt atgaaacaac accaaaaaag gggagtgacc cggccctaat
     1741 tagggatgtg ttttgtgcac tgaggacttg ctcccgattt taaagttggc aatgcttggg
     1801 gatctttcca tacataaggg agcatgatct caactcgtca ccctctccac ctatggtctc
     1861 tatccaatcg gattgtatct tgaaacaaaa agaggcctgt tagggaaagc agccagattc
     1921 tcccaaaata acaagagaat taaaaaaaaa aaccggcttg attttgacaa tatgggtttg
     1981 cagcaactac tcccatagct ctgccatagg gaaggggaat ggtggggaaa cttttaagat
     2041 ggcgttcaca atgggaaaat gctgaggaag aaagccttgc ctatcacttg aggaggtcag
     2101 aaagtgacca gggaaagcag ggctactggt agggattacc atctgtctag cagcaagtgc
     2161 tccctttgga gtgatcctgt tttcctcaca gaaacagctc agtccaaatg aacggtaggc
     2221 aggttgatgc tgtcctcata acaaacagca gaacttaagg atgacacaac cccttgattc
     2281 cagctccgtg caaagcttgc gttctttttt tcttttcctt ttcttaaatg tgaagaccca
     2341 agcaaaaacc agctgtagcc aagaaaacat gcgcaaggac caaagattta actgataaaa
     2401 gttcccaagc agaagaggta ggataggata tataaagagt tactatattt gttacacacc
     2461 agtacacatc aaag
//
