LOCUS       NM_001025626            1310 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transcription elongation factor, mitochondrial
            (Tefm), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001025626 XM_213410
VERSION     NM_001025626.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1310)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1310)
  AUTHORS   Minczuk,M., He,J., Duch,A.M., Ettema,T.J., Chlebowski,A.,
            Dzionek,K., Nijtmans,L.G., Huynen,M.A. and Holt,I.J.
  TITLE     TEFM (c17orf42) is necessary for transcription of human mtDNA
  JOURNAL   Nucleic Acids Res 39 (10), 4284-4299 (2011)
   PUBMED   21278163
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC098792.1.
            
            On Jul 22, 2005 this sequence version replaced XM_213410.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098792.1, FM108449.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132298, SAMEA5760400
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q25"
     gene            1..1310
                     /gene="Tefm"
                     /gene_synonym="RGD1306595"
                     /note="transcription elongation factor, mitochondrial"
                     /db_xref="GeneID:287554"
                     /db_xref="RGD:1306595"
     exon            1..66
                     /gene="Tefm"
                     /gene_synonym="RGD1306595"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1121
                     /gene="Tefm"
                     /gene_synonym="RGD1306595"
                     /codon_start=1
                     /product="transcription elongation factor, mitochondrial"
                     /protein_id="NP_001020797.1"
                     /db_xref="GeneID:287554"
                     /db_xref="RGD:1306595"
                     /translation="MAWRANLACLIKAGGRTRWFPLPEYLSMSPVLHNTCSRRKSTAP
                     EKLAASVAACDTNGKEPGTALGRLYSPEQQASILHVLNTASDKELEAFRLLRGRKSVN
                     IVEHRKKFGPFQSLESLIGVPLIQYKTAVEVCNSILCPENRRRKKSQEKWVLRKFIKP
                     GVEKERLKAVNSIVSIVFGTRRIAWAHLDRKPTVLDWQQAECWKLTNKTYPSSFYLEE
                     ISSVVSKIPKADLYILEKSGLSIQNTSLFPILLHFLITEAMLYALLNKTFAKDGQHRV
                     LSINRNAVGKHFDLMIGDTRTSGRELVKQFLSESVLKEQPRVFFPRELAVQYRQKIVK
                     SSHRIEELYDSLLQAVAFYELVFGSGSELKC"
     exon            67..527
                     /gene="Tefm"
                     /gene_synonym="RGD1306595"
                     /inference="alignment:Splign:2.1.0"
     exon            528..677
                     /gene="Tefm"
                     /gene_synonym="RGD1306595"
                     /inference="alignment:Splign:2.1.0"
     exon            678..1281
                     /gene="Tefm"
                     /gene_synonym="RGD1306595"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaaggcgtg agagagcctg gcgatggctt ggagggctaa ccttgcttgc ctcatcaagg
       61 ccggagggag gacgagatgg tttccactcc cagagtactt atccatgtct ccagtcctac
      121 ataatacctg ttctcggaga aagtccacgg cgcccgagaa acttgctgcc agtgttgctg
      181 cttgtgatac gaatggaaag gagcctggga ctgcactggg caggctctac tccccagagc
      241 agcaggcctc tatcttacac gtgttgaata cagcttctga taaagaactg gaggctttca
      301 gattgcttcg gggaagaaag tccgtcaata ttgtggaaca cagaaagaag tttgggccgt
      361 ttcagagttt ggagagtttg ataggcgtgc ccttgatcca gtataaaact gctgttgaag
      421 tttgtaactc cattctttgt ccagagaaca gacggagaaa aaagtcacag gaaaagtggg
      481 tgctgagaaa gttcatcaaa ccaggtgtag agaaagagag acttaaggca gtcaatagta
      541 tcgtatctat tgtgtttggt actcgaagaa ttgcgtgggc tcaccttgac cggaaaccaa
      601 ctgtgctgga ctggcagcag gcagagtgct ggaaactaac taacaaaaca tacccatcgt
      661 ccttttatct ggaagagatt tcttcagtcg tttcaaagat ccctaaagca gatctctaca
      721 ttttagaaaa atcaggactt tccattcaga acacatctct gtttcctata ctgttacact
      781 ttcttatcac ggaagccatg ctgtacgccc tactcaacaa aacttttgca aaagatggcc
      841 agcatcgggt gctgagcata aatcgaaatg ctgtgggcaa gcactttgac ctgatgatcg
      901 gcgacacgag gactagtggg agggagctag tgaagcagtt cctctctgag tctgtgctga
      961 aggagcagcc tcgggtgttc ttccccaggg agcttgcagt gcagtacaga cagaagattg
     1021 tgaagagctc acaccggatt gaggagctgt acgattcgtt actacaagct gttgcttttt
     1081 acgagttagt ttttggcagt ggctcagagc tcaaatgtta atgcactcac tctatgttac
     1141 actaatttat taaagcaact gttctcatct tctatgttag tggagaagaa aacattttga
     1201 atatattttc catgtttata aaatctgatt tttggcttga aaaaaatgag ccaagaacaa
     1261 atcaataaat attttgtgag aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
