LOCUS       NM_001399144            2860 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tubulin epsilon and delta complex 1 (Tedc1),
            mRNA.
ACCESSION   NM_001399144 XM_001072932
VERSION     NM_001399144.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Breslow,D.K., Hoogendoorn,S., Kopp,A.R., Morgens,D.W., Vu,B.K.,
            Kennedy,M.C., Han,K., Li,A., Hess,G.T., Bassik,M.C., Chen,J.K. and
            Nachury,M.V.
  TITLE     A CRISPR-based screen for Hedgehog signaling provides insights into
            ciliary function and ciliopathies
  JOURNAL   Nat Genet 50 (3), 460-471 (2018)
   PUBMED   29459677
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 4, 2022 this sequence version replaced XM_001072932.7.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.26746.1,
                                           SRR26643429.25274.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JAXUCZ010000006.1  138057977-138058131
            156-234             JAXUCZ010000006.1  138058233-138058311
            235-437             JAXUCZ010000006.1  138058729-138058931
            438-587             JAXUCZ010000006.1  138059131-138059280
            588-686             JAXUCZ010000006.1  138059647-138059745
            687-773             JAXUCZ010000006.1  138062538-138062624
            774-953             JAXUCZ010000006.1  138062961-138063140
            954-2860            JAXUCZ010000006.1  138064310-138066216
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..2860
                     /gene="Tedc1"
                     /note="tubulin epsilon and delta complex 1"
                     /db_xref="GeneID:690422"
                     /db_xref="RGD:1596085"
     exon            1..155
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..1283
                     /gene="Tedc1"
                     /note="uncharacterized protein C14orf80 homolog"
                     /codon_start=1
                     /product="tubulin epsilon and delta complex protein 1"
                     /protein_id="NP_001386073.1"
                     /db_xref="GeneID:690422"
                     /db_xref="RGD:1596085"
                     /translation="MGRRRSRVEGAARALPEAVAALSRSLPAGPSPEIFRRAKFDRPE
                     AAPVLWQLLLRVLSPLAANNTWTDLAPEAQARVVKSALGSRGYPRSVLLQFPDGSSQG
                     SRELLLALSWLLAQGPLLEQLLAQTRVQVGDQLPQCEALTSPGPLACLVATKSPVDLR
                     LVEWLMGKLRFRWRCLILSQREQCTLLSKIHLYTQGCHSQQSLGHLSVAETEMLRDPE
                     SSQQLLHALESENARLEAALEWRRCELVFWQWMDTVLDACSPETPAVTSQPTALPMIS
                     EGGLGELESVRQELLALQEELREVAEPRRAAWESRVGGLGQGPEWSNSRKALREVVER
                     ELADLQGSWKLCSTPAQPQRPHRLVRSKDGAPRRQGLQAAEVIRTLSAKEDCLKKALH
                     QLQCQCQQELARLAGTLPGLIWVLPPGH"
     exon            156..234
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     exon            235..437
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     exon            438..587
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..686
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     exon            687..773
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     exon            774..953
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
     exon            954..2860
                     /gene="Tedc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgctggg tgctggctgt atggggcggc ggcggagccg agtggaaggg gctgccaggg
       61 ccctgcctga agctgtcgca gcgctgagtc ggtccctacc agctgggccc agccccgaaa
      121 tcttccgccg cgcaaagttt gatcgaccag aggcggctcc agtgctctgg caacttctct
      181 tacgtgtgct ctcaccgctt gctgcaaaca atacctggac cgaccttgcc ccagaggccc
      241 aagcccgtgt ggtgaaatca gcactgggct cccgaggcta ccccaggtct gtgctgctac
      301 aatttcccga cggcagttct cagggaagcc gggaactgct gctggccctg tcctggctcc
      361 tggcccaagg acccttgctt gagcagctgc ttgcccagac ccgtgtgcag gtgggtgacc
      421 agttgcccca gtgtgaggcc ctgaccagtc ctggacccct tgcatgcctt gtggctacaa
      481 agagccctgt ggatctccgc ctggtggaat ggctgatggg aaagttgcgc ttcaggtgga
      541 ggtgcctgat cttgagtcag cgggagcagt gtaccctcct cagtaagatc catctgtata
      601 cccagggatg ccacagccag cagagcctgg gccatctttc tgtcgctgaa acagagatgc
      661 ttagagatcc agagagcagt cagcagcttc tgcatgccct ggagagcgag aacgcccggc
      721 tggaggcagc tctggagtgg cggcgctgtg agctggtctt ctggcaatgg atggatacag
      781 ttctggatgc ctgttccccc gagactcctg ctgtgacctc acaacctaca gccctgccca
      841 tgatctcgga aggtgggctc ggtgagctgg agtccgtgag acaagaactg ctggccctgc
      901 aggaggagct acgggaagtg gccgagcccc ggcgggctgc gtgggaatcc cgggttggag
      961 gcctaggtca ggggccagag tggagcaact caaggaaagc cttgcgggag gtcgtcgaac
     1021 gggagttggc agacctgcag gggtcctgga agctatgcag tacccctgcc cagccacaaa
     1081 gaccccatcg actggtgaga agtaaagacg gggcaccaag acgccagggc ctacaggcag
     1141 ccgaggtgat caggacactg agcgccaagg aggactgtct gaagaaggca ttgcaccagc
     1201 tacagtgtca gtgtcaacag gagctggcca ggctggccgg tactctgcct ggcttgattt
     1261 gggttctgcc ccctggacac tgaaggcccc caagatgtac ccatctgtgt agagcttggg
     1321 taggatctca gaggagcaga ctggggctgc atggagcaga ggtccaggcg tgtgctccct
     1381 ccagggccag agcccttttc ctgcagttct agtgttacaa taggctggtc cccctgaaag
     1441 gtttggaggg gacctatgtg tacacagtgg agctgttcct ggggacatgg ggctgcttcc
     1501 cattatcttc ctctttttgg catactaggt atgtgtagtg tatggctggc accatgctgt
     1561 aatcacatat gccccaaagt acagaaagtc ttgggcctct cctgagtggg acagctctgg
     1621 tttttccctg aacctctttc ttagactctg gctgtatgcc acctcctgct ccagcagagc
     1681 ctcttcctat actgggccat ggatgtgcct ggtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     1741 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgcttgtgcg cgtgtgcacg tgtgcatgtg
     1801 tgcatgtgta tgtgtgtgtg tggtggggag ctggatggga gcctgggggc tctgcctggg
     1861 agagcggagg agaggaagct gcagtgcaga caggaggcct ttgttctgaa ggcctctggg
     1921 taagctcggc cctcacaaag caccctgtgt ccaggaagtg cacccagcct ggtgggatgg
     1981 ctctgtgcta acccactctt ctcccagcca gcaggctcag gcaggatcca tgagctctag
     2041 cccgaccttc ccttagtccc aaaccctgag cagctggtag gacccatagg caacctccag
     2101 tctcctgctt atccaggcca gagccacggc ctgactccgg gagccttggg cactctacta
     2161 gaacattctt ttatgggggt gtcctgcttg cctggtggtg tatgtctggg gtgcaggtag
     2221 cctctggccc gaggcagggc acatgctggg tttgttccta gcacacttct ggaggaccag
     2281 tgtctagtag gtactaacct ttatggacgt agctcctaga gcctctggaa tcttgtggcc
     2341 tgcagcgcct gttcctgctt gggaacactt gttcagctct tcttgctgcc tccccctgtg
     2401 ggctctggct ctggtccagg ggcacgtggg aacttgactg tctggctcct tgtgactatg
     2461 atttgggctg taaacaagtc tacttaagct ccctgtttct gaaaagtata ggacttccta
     2521 ggtgccatgg agctcagcct taaaaacccc agagcagctc caggtctccg agctgttact
     2581 tctccacatg ctctgcagag ttagctcgat tcctgtcaga atcccgtgta tgtgtatcgc
     2641 ctcagtgtgg gactcatggg tctcaggcca cgtgaagatg agagcctata gggggctaga
     2701 cttatccttg gccaagttgt ccgttgggga ggccctcaga actagctttt ccacacataa
     2761 gagcttgaag tagctcatgt ttgtggtctg tgtcctcagc tcccatactt gggagccaca
     2821 cggtgaagta ggaataaact ccagtgttgg ttggccacaa
//
