LOCUS       NM_001037191            4310 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus tectonin beta-propeller repeat containing 1
            (Tecpr1), mRNA.
ACCESSION   NM_001037191 XM_221926
VERSION     NM_001037191.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4310)
  AUTHORS   Chen,D., Fan,W., Lu,Y., Ding,X., Chen,S. and Zhong,Q.
  TITLE     A mammalian autophagosome maturation mechanism mediated by TECPR1
            and the Atg12-Atg5 conjugate
  JOURNAL   Mol Cell 45 (5), 629-641 (2012)
   PUBMED   22342342
REFERENCE   2  (bases 1 to 4310)
  AUTHORS   Ogawa,M., Yoshikawa,Y., Kobayashi,T., Mimuro,H., Fukumatsu,M.,
            Kiga,K., Piao,Z., Ashida,H., Yoshida,M., Kakuta,S., Koyama,T.,
            Goto,Y., Nagatake,T., Nagai,S., Kiyono,H., Kawalec,M.,
            Reichhart,J.M. and Sasakawa,C.
  TITLE     A Tecpr1-dependent selective autophagy pathway targets bacterial
            pathogens
  JOURNAL   Cell Host Microbe 9 (5), 376-389 (2011)
   PUBMED   21575909
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC103478.1.
            
            On Nov 18, 2005 this sequence version replaced XM_221926.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC103478.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4310
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..4310
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /note="tectonin beta-propeller repeat containing 1"
                     /db_xref="GeneID:304285"
                     /db_xref="RGD:1306873"
     exon            1..47
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            48..282
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..3558
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /codon_start=1
                     /product="tectonin beta-propeller repeat-containing
                     protein 1"
                     /protein_id="NP_001032268.1"
                     /db_xref="GeneID:304285"
                     /db_xref="RGD:1306873"
                     /translation="MPTSMLWAVDLFGRVYTLSTAGQYWELCKDVQLEFKRVSAATQC
                     CWGIACDNQVYLYVCSSDVPIRHREEAYENQRWNPMGGFCEKLLPSDRWSWSDVSGLQ
                     HRPLDGVALPSPYWEWESDWYVDENFGGEPTEKGGWTYAMDFPATYTRDKKWNSCVRR
                     RKWIRYRRYKSRDTWAKIPSKDDPKELPDPFNDLSVGGWEITEEPVGRLSVWAVSLQG
                     KVWYRENVSHPNPEGSSWSLVDTPGEVVQISCGPHDLIWATLWEGQALVREGICRNNP
                     KGNSWSIVEPPGSENGIMHVSAGVSVVWAITKDRKVWFRRGVNSHNPCGTSWIEMVGE
                     MTMVNVGLNDQVWGISCEDRAVYFRQGVTPSELSGKTWKAIVVGRESDRSHSGSSSSL
                     LSAGCFFGEEVRGSGTESAPSDTDASSEVERQGPERSLPKESLDNSRNLKGSSSKGHE
                     STRNTEDPMENACLAEGQAKAPKTSGPDECHGPAPTPAELPWTNIDLKEPKKASNQPA
                     AGFPETSGLSSLGLFPMGMEEPYGADDHPLWAWVSGGGCAVEAGSALKWFTVQSGLSP
                     SVQTLSLSITPAQTAAWRKQIFQQLTERTKRELESFRHYEQAVEQSVWVKTGALQWWC
                     DWKPHKWVDVRVALEQFTGHDGARDSILFIYYVVHEEKKYLHVFLNEVTVLVPVLNEA
                     KHSFALYTPERTRQRWPVRLAATTEQDMNDWLTLLSLSCCESRKVHGRPSLQAIWSVT
                     CKGDIFVSEPSPDLEAHEHLLPCDQMFWRQMGGHLRIIEANSRGVVWGIGYDHTAWVY
                     TGGYGGGCFQGLASSTSNIYTQSDVKSVYIYENQRWNPVTGYTSRGLPTDRYMWSDVT
                     GLQECTKAGTKPPSLQWTWVSDWYVDFSVLGGTDQEGWQYASDFPASYHGYKTMKDFV
                     RRRCWARKCKLVTSGPWLEVAPIALSDVSIIPESADANGRGHNIALWAVSDKGDVLCR
                     LGVSELNPAGSSWLHVGTDQPFASVSIGACYQVWAVARDGSAFYRGSVSPSQPAGDCW
                     YHIPSPPKQKLTQVSVGQTSVYALDENGNLWYRAGITPSYPQGSSWEHVSNNVRKVSV
                     GPLDQVWVIANKVQGSHGLSRGTVCRRMGVQPREPKGQGWDYGIGGGWDHISVRANAT
                     RAPRNMSRDQEAHGPGPVCC"
     exon            283..465
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            466..588
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            589..714
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            715..889
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            890..990
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1092
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1238
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            1239..1744
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            1745..1890
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            1891..2046
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2196
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2197..2354
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2355..2482
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2483..2585
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2586..2682
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2683..2762
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2763..2819
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            2820..3000
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            3001..3136
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            3137..3229
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            3230..3336
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            3337..3456
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
     exon            3457..4262
                     /gene="Tecpr1"
                     /gene_synonym="RGD1306873"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcagaagc ctccgctggg aacccgcccc gccgggcgtg ggcccagtgc tgcggccatg
       61 cccacctcca tgctgtgggc agtggacctc ttcgggagag tgtatacact gtcaacggcc
      121 ggtcagtact gggagctgtg caaggatgtc cagttggagt tcaagcgggt cagtgcggcc
      181 actcagtgct gctggggcat cgcctgcgac aaccaggtct acttatatgt gtgctccagc
      241 gatgtgccca tccgtcacag agaggaggcc tatgagaatc agcgttggaa ccccatggga
      301 ggcttctgtg agaagctcct gccaagtgac cgctggtcgt ggagtgacgt gagtgggctc
      361 cagcatcggc cgctggatgg cgtagcactg ccttcgccat actgggaatg ggagtcagac
      421 tggtacgtgg atgagaattt tggaggggag cccaccgaga aaggggggtg gacatacgct
      481 atggacttcc ctgctaccta cactagagac aagaaatgga attcatgcgt gcgaaggcgg
      541 aagtggatcc ggtataggag atacaaatcc cgggacacct gggccaagat cccctcaaag
      601 gatgacccca aggaactccc tgaccccttc aatgatctgt ctgtaggagg gtgggagatc
      661 acagaagaac ctgtaggccg cctgtcagtg tgggctgtat ccttgcaggg gaaggtgtgg
      721 taccgagaga acgttagcca ccccaatcca gaaggttcct cctggtctct tgtggatacc
      781 ccaggggaag tggtccagat cagctgtggg ccccacgacc ttatatgggc caccctctgg
      841 gaggggcagg ctctggtcag agaaggaatc tgcaggaaca accccaaagg aaattcctgg
      901 tccatagtgg agcctcctgg gtctgaaaat ggcatcatgc acgtctctgc gggagtcagt
      961 gtggtctggg ccatcacaaa ggaccgcaaa gtgtggttcc ggaggggcgt caactctcac
     1021 aacccctgtg gcaccagctg gatcgagatg gtcggagaga tgaccatggt gaacgtgggg
     1081 ctgaatgacc aggtctgggg tatcagctgt gaggaccgag ctgtatactt ccggcagggt
     1141 gtcactccca gcgagctcag tgggaagaca tggaaggcca tcgtcgtggg ccgagaaagt
     1201 gaccggtcac actctggcag ctcgtccagt ctcctcagtg ctggctgctt cttcggcgag
     1261 gaggtgaggg gcagtggtac ggaatctgca cccagtgaca ccgatgcctc ctcggaagtc
     1321 gagagacagg gccccgaacg gtctctcccc aaagaatctt tggataattc caggaacctt
     1381 aaaggaagct cgtccaaggg ccacgagagc accaggaaca ctgaggaccc catggagaac
     1441 gcctgcctgg ctgagggcca agcaaaggct cccaagacct ctggccctga tgagtgccat
     1501 ggcccagccc ccacgccagc tgagctgccc tggaccaaca ttgacctaaa ggagcctaag
     1561 aaggcgtcta accagccagc tgccggcttt cctgagactt cgggcctctc ctccctaggg
     1621 ctgttcccga tgggcatgga agagccctat ggggcagacg accatcctct gtgggcctgg
     1681 gtgtctggag gtggatgtgc ggtggaagcg ggctctgctc tcaagtggtt cactgtccag
     1741 tcaggcctat ccccctcagt gcagacgttg tccctgtcca tcacacccgc ccagaccgct
     1801 gcctggagga aacagatctt ccagcagctc acggagagga ccaagcgaga gctggagagc
     1861 ttcagacact atgaacaggc cgtagagcag tcggtgtggg tgaagacggg ggccctgcag
     1921 tggtggtgcg actggaagcc ccacaagtgg gtggacgtcc gtgtggccct ggagcagttc
     1981 acagggcatg acggggctcg agacagcatc ctcttcatct attacgtggt ccatgaggaa
     2041 aagaagtacc tacacgtgtt cctgaatgag gtgaccgtgc tggtccccgt gcttaatgaa
     2101 gccaagcact cctttgccct ctacaccccc gaaaggacca gacagaggtg gcccgtacgc
     2161 ctggctgcca ccactgagca agacatgaat gactggctta ccctgctcag cctgtcctgc
     2221 tgcgagagcc ggaaggtcca cggacgcccg tccctgcagg ccatctggtc tgtcacttgc
     2281 aagggtgaca tctttgtgag tgagcccagc ccagacctgg aagcccatga gcacctgcta
     2341 ccctgcgacc agatgttctg gcgacagatg ggaggccacc tgcggatcat agaggccaac
     2401 agccgaggcg tggtgtgggg catcggctat gatcacacag catgggtgta cacaggcggc
     2461 tatggcggag gctgcttcca aggcctggcc agcagcacca gcaacattta tacacagtcg
     2521 gacgtgaaga gcgtctacat ctatgagaac cagcgttgga accctgtcac gggctatacc
     2581 agcaggggtc tgcccactga ccggtacatg tggagtgatg tcacagggct acaagaatgc
     2641 accaaggccg gcacaaagcc cccatccctg cagtggactt gggtttctga ctggtatgtg
     2701 gacttcagtg tcctcggagg caccgatcag gaaggatggc agtacgccag tgatttccct
     2761 gcctcttacc acgggtacaa aaccatgaag gattttgtca ggagaaggtg ctgggccaga
     2821 aaatgcaagc tggtgaccag cgggccgtgg ctggaggtgg cccccatcgc cctcagcgat
     2881 gtgtccatca tccccgagag tgcagatgct aatgggagag gacacaatat tgcactgtgg
     2941 gccgtcagtg acaaggggga cgtcctgtgc cgcctgggtg tgtctgaact caaccctgcg
     3001 ggctcctcct ggctgcatgt gggcactgac cagccctttg cctctgtctc tatcggagcc
     3061 tgctatcagg tgtgggctgt ggccagggat ggctctgcat tctaccgggg ctctgtgtct
     3121 ccttcccagc cagctggtga ctgctggtac cacatcccat ctcctcccaa gcagaagctc
     3181 acacaagtgt ctgtgggcca gacatcagtt tatgccttgg atgaaaacgg gaacctgtgg
     3241 taccgagcag ggatcacccc cagctacccg cagggctcca gctgggagca cgtgtccaac
     3301 aatgtacgca aagtgtctgt ggggccactg gaccaggtct gggtgattgc caacaaagtc
     3361 caggggagcc atggcctgag ccggggaaca gtgtgtcgtc gcatgggtgt ccagcctcgg
     3421 gagcccaagg gacagggctg ggactatggc attggtggag gctgggacca catctctgtc
     3481 cgggccaatg ccaccagggc accgaggaac atgtccaggg atcaggaggc ccatggccca
     3541 ggtcctgttt gctgctgagg ccactcctca cctggaggca aggacggttt gagcctgaag
     3601 gaccagaact gagcctttct tgtgcagtat gggagggcat cacccagggc cccacacaca
     3661 gggagtcagg tcagagtcag ccatttctgc agcaccggca agaatgccag aggatgaaac
     3721 tgtgggggcg ctgagtttgt gagggatgct gtagggaaga gccaagatga caattctgtg
     3781 ggtcccctga gccccggtct ctgcctgcaa tacctcccac ctttccaggc caggaactca
     3841 gagccctcta gaaattctgg tcctgagagg cagaggcagg ggaggacctt ccacacctgg
     3901 agaccccaaa tcacctccag gagaaatagc tctgaggttc aggtctacag gcctcagtct
     3961 ggccattcct cagcagggtt tcctgaggga gtttttgctt caaaagaagc aaagggctcg
     4021 atgcctgtag gcctggcact caggagactg aggcaggcga atggtgagtc tgagactacc
     4081 caggacgaca tagcaagaca gtcacaaaaa taaatatcta gataagcaaa ccaggcatga
     4141 aggtgcatgt ctgtactcca aagctgaggg caaggtcaga agttcaagag catcctcaga
     4201 ctccagagta aatttggcca gcctgggcta cataagaccc tgcttcaaga aaaaaaaaaa
     4261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
