LOCUS       XM_006237424            6136 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TEA domain transcription factor 4
            (Tead4), transcript variant X1, mRNA.
ACCESSION   XM_006237424
VERSION     XM_006237424.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006237424.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6136
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6136
                     /gene="Tead4"
                     /note="TEA domain transcription factor 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 4 long SRA reads, 26 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:683522"
                     /db_xref="RGD:1585671"
     CDS             649..2190
                     /gene="Tead4"
                     /codon_start=1
                     /product="transcriptional enhancer factor TEF-3 isoform
                     X1"
                     /protein_id="XP_006237486.1"
                     /db_xref="GeneID:683522"
                     /db_xref="RGD:1585671"
                     /translation="MPLGDVGSWSAHSAHSYRAPLQTPAPGVGTASATRSGPEAVAAA
                     GRLGPPRGLGAAGRALPPRLLNPGTGPTGAPPSRALEGKAGIITSNEWSSPDSPEGSS
                     ISGGSQALDKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELI
                     ARYIKLRTGKTRTRKQVSSHIQVLARRKAREIQAKLKDQAAKNKALQSMAAMSSAQIV
                     SATTFHSKMALARGPGYPAISGFWQGALPGQPGPSHDVKPFSQNTYAVQPPLPLPGFE
                     SPVGPTPSPSAPPAPPWQGRSIASSKLWMLEFSAFLERQQDPDTYSKHLFVHISQSSP
                     SYSDPYLETVDIRQIYDKFPEKKGGLKELFERGPSNAFFLVKFWADLNTNIDDQGSAF
                     YGVSSQYESLENMIITCSTKVCSFGKQVVEKVETEFARYENGHYLYRIHRSPLCEYMI
                     NFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGAQHHIY
                     RLVKE"
ORIGIN      
        1 agtgcttcag agattgtttg atttgggggg aatagcaaag gcttttcttt gattttaagt
       61 ttcccaaagt gaagaggtga gtgccggagc gaggtagtaa ctaattgctt taagccaaat
      121 ggttctaaga ctcctagccc gagcccacgt gtttcttcta aattgatctg acgtacttct
      181 ttgaaactca gacttctaac ttcatggcca agctgtcccg gaccctgggt catcagcagc
      241 taagttccag ctctctgtga accactgctg ggacccactc tttattattg tcccagcatc
      301 cggtggacct attcacagga taaagattca tggagttaca acagagtcca tgacgggtct
      361 cccctttctt ccctgctttc tgagaagtga cagttctgca gatcccaagg gacaaggaaa
      421 gaactgaaag gctgatgttg gagagggctg gagagggaaa gcggtggcgg atctgggagc
      481 agagccggga gttcctgctt cctgctcccg gagcgagtgt cctccgtagc agcctcgggg
      541 aagggaacag cccttcctgc tccggtccgc gtactccagg agcacagcga ggcgcgcccc
      601 accccggcgg aggggacggt ttttagcagg aggtggtgga gggattcaat gccactcggg
      661 gatgtgggaa gctggagcgc ccattccgcg cattcctacc gggctcctct gcaaactccg
      721 gccccggggg tggggaccgc ctcagctaca cgctcgggcc ccgaagccgt cgccgcggct
      781 ggaagacttg gccccccgcg tggacttggt gcagccggcc gagcgctccc accccgcctc
      841 ctgaaccctg ggaccggtcc aacgggcgct cctccaagcc gagccttgga gggcaaggcc
      901 ggcatcatta cctccaacga gtggagctct ccggactccc ccgaggggag cagcatctct
      961 gggggcagcc aggccctgga caagcccatc gacaatgatg cagagggtgt gtggagcccg
     1021 gatattgagc aaagcttcca ggaggcactg gctatttacc caccatgcgg ccgccgcaaa
     1081 atcatcctgt cagacgaagg caagatgtat ggtcggaatg agctgatcgc acgctacatc
     1141 aagctcagaa cagggaagac acgtacaagg aagcaggtct ccagccacat ccaggtgctt
     1201 gcccgtcgaa aagcccggga gatccaggcc aagctcaagg accaggcagc taagaacaag
     1261 gccctgcaga gcatggctgc catgtcgtcc gcccagatcg tctcggccac aaccttccac
     1321 agtaaaatgg ctcttgcccg gggccctggc tacccagcaa tctcagggtt ttggcaagga
     1381 gctttgccag gccaacccgg accctcccat gatgtgaaac ctttctctca aaacacctac
     1441 gctgtccagc ctccgctgcc tctgccaggc tttgagtctc ctgtaggacc caccccatca
     1501 ccctctgcac cgccagctcc tccatggcaa ggccgcagca tagccagctc caagctctgg
     1561 atgttggagt tctccgcttt cctggagcgc cagcaagatc ctgacacata tagcaaacac
     1621 ctgttcgtgc acatcagcca gtcaagcccg agctacagtg acccctacct cgaaaccgtg
     1681 gacatccgcc agatctatga caagttccca gagaagaagg ggggcctcaa ggagctattt
     1741 gaacgggggc cctctaatgc cttcttcctt gtgaagttct gggcagacct caataccaac
     1801 atcgatgacc agggcagcgc cttctatgga gtctccagcc agtatgagag cctggaaaac
     1861 atgattatta cctgctctac taaggtctgc tcatttggca aacaagtggt ggagaaagtt
     1921 gagacagagt ttgctcgcta tgagaatggt cactatttgt accgcatcca ccggtcccca
     1981 ctctgtgagt acatgatcaa ctttatccac aagctgaagc acttaccaga gaagtacatg
     2041 atgaacagcg tgctggagaa cttcaccatc ctgcaggtgg tcaccaaccg agacacacag
     2101 gagaccttgc tgtgtattgc atatgttttt gaagtttcag ccagcgaaca cggggctcag
     2161 caccacatct accgcctggt gaaagaatga gagacttgga gagctatggt gggggaaagt
     2221 ccaggaaatg gggacctggg agggaatatt cagggacagc ccccaaaaga gccaggagaa
     2281 ccaagcagag ttaccagttt tcttcttacc aggaacaaac tgcctgatct cgcagtgctc
     2341 aacccccaat aaacccaagg agtcaagtat tttcagagga gctggtttag cctgtatgaa
     2401 cccagaaggg catgggagga gggggcacca agaggcaagc tgaaagcgat aacctgaggt
     2461 gcgccaggat ggcccaggaa ccagaacccc ggtggactca gccaggcaca tcaccaagac
     2521 accaaagctc aagacccagt ggtcccttct gaactcctag aacccaatac tctgctgctg
     2581 gtcacaacag tgactgagga cagatagcac gtgtgtcaca cactcagaga tgctgtgcag
     2641 gacttagtgc acattgtcag tcaatcctgc catcgatact ggagtttcga tatggaagaa
     2701 ggtccacccc tacaaaaggg gctggattta ggtgtgactg caacatagtt gttggactga
     2761 gaccctatga agagctcctc aggtggcttt gttccttctg cagtggccca gaagggggca
     2821 ggagctgaag caaggcttgg agttagggag ttctgcttca gggccagcat ttccagctgc
     2881 ctgacctcga ccggttcctc agcttctcta ttagtcccct gtctcctttg ctcagccctg
     2941 tgaaggggag aatgtttgga cagtacctga gtcttgtggt gccagttaaa tgatccaatc
     3001 ctcagcccct tgcctctctc cctctggagg tcctgcatct gtctctcccc tgccctctca
     3061 aggctttctg gtctctgctt ccccagttgg agccagttct agtagtctgg agtctcagga
     3121 agaaagctgt aacctgggtg tgtttgtgtg tgcccaggac tcagggatgc atctgtgagg
     3181 gtgtagcagt gggcagggca acattgtggg gatgctacgg aggtgaggag ataagggctc
     3241 tggagtcagt ctagcttgac tttgatgtgc aaccttcaaa aaaaaaatgt tgtggtgcct
     3301 cagttacccc atctgtaaaa tgggtataac attcacctac ctcgtgtatg gacagtgcct
     3361 cacacagtgc tgagcacatc cacatgttca ataaatatgc atcggtacta actgttggaa
     3421 cttcaagtcc agctaaggat ccaggctaga gagctatgca ctagggtggg tggtccctgc
     3481 ctatcacaga gaggagtgat cagagggtct cagggaagag gtagcatgag ggaacaggtt
     3541 gtaagaggaa ggtagctaat atttactggt gttatttctg tgagtttgat tttggggcta
     3601 gtgtttgaca caggctaagc gaccatgaaa gtatgcaaat aagcgtatgg gaacagtttg
     3661 taagtatctc agatgaggaa gacagactga gctacccagt ctttctggag ccccaagttc
     3721 cctctcctta acacaaagca atttaaccca tactctgctc cccaccatgt tagaatggtt
     3781 gccaatacag gccttcttcc ttcctatggt gccgggtaga ggtcctgcca tcgaacaggg
     3841 tcaggggtcc ctgaaagtct actgcatccc tggtcttgtg accaggattc accagtctac
     3901 atgtaggcct gtgtttgcag tctccctgcc ccatccaaat cctagccccg gccccctccc
     3961 actgcccggg agcacactta gacattttag actatggagt cagcctcttg ggacacgagg
     4021 gggtacaacc ttttcctatt ggaagcaggt cagtccagat gtttgggttc cagtgtgggt
     4081 tgttttttcc tgtgttaagt aacctcagtg gtctaatgga aagtaaccat agaagactat
     4141 cttactgcct ctccattcaa gtcaacaggg cacctccctt atcccaccat atggtactgg
     4201 gctgaaaaca tttagctttt taagatgagt tcttcatctc ttgcctgggc tattgtctcc
     4261 agtgatcctc ctgcctcagc ttcacaaaga gctgggtcta cgggttctcc ccactgagcc
     4321 ctgcactcct attttgaaga ctgaaaaagc agggctcaca gagttttggg aattgggttc
     4381 tggtgttggt gtattttttc ctttgctttg tgagtagttg gttgacttct gaggtgtggc
     4441 aggctctggg aatgtgtcca tgaacagaat agtcagggtg gctgtgagct tgctttggac
     4501 tgaggtgggg gtgaggggtg gttggcacca agttaaggag actcataggc aatgggcagt
     4561 gggggtaggt gggtacctaa ggtcagcttc actttagggg aggctgctga agcccggact
     4621 cttcactgat tcttgaattg cagacaagtg gatccggagg aaggaaaatt ccaagggaga
     4681 attgagaggc ctggagaaag tgagggatgg gtgtgcccca ggggtatggt gactgaccta
     4741 ggctggactt aaccctagct aacaggccag gtaggaattc aggcggttca gtcctttgtg
     4801 tcccctgcac tcccctgtag atgtgcactt tcgaatgctc tcaggatggt agctagaact
     4861 gggggtgtta agcaagggag tacattcctt tgatgctatt tttagaagaa agctctggag
     4921 cattgggttt gtacagagga gcagctggaa ctgttggggg gtgcgaaccc atgaagcctg
     4981 ccgacctggg tgtctgtggg tggaaactat ctgttttctg gatctgttac acttggcaac
     5041 caggcaagag gcaagagaga gtggaggtga catggccatc cgtgtcattg ggcaagggac
     5101 cccaaagtcc tagggagaga gagccctcca tcctgggggt ggaaatattc cagtgttatc
     5161 tagttagcag gaaatgccaa aaatggctgt agggacaggg gagaggtctt ttgcctgaca
     5221 gggtctgaca ctgttggggc agattgtgcc aaaaaagtgt caaaggaatg gaaagtgtgt
     5281 gcccacccca ccaccacaca accccacccc tacacaaaac aatgcacaca caaaaaacta
     5341 aataaatgaa taaacacgag agagagagag agagagagag agagagagag agagagacgc
     5401 ttatgtatgc atgtgtacaa atggttgttt cctagacttc tgcaatagac cttttgtccc
     5461 tagtctatgg tgcactcagt ctagtctttc ccagtctggg gacagagtag gttggcagag
     5521 gttgcaggac tgagggaagg ctgggacctg ggacctgggg cagtgtatcc cctatctggg
     5581 cacccaggaa cagaagagaa acaccagaac agtgggagct tcccccacgg tttctacatt
     5641 gtggcctcct gggccggacc ctgtgctgaa aacttcttag agctcgagta gcaggggtca
     5701 gtggcacctc gggtaaccca tcttacagat caaaaagaaa atgacctttg ccccaaaggc
     5761 ttgattcttt atagaatgta gctaactgat ctgcccagcc aagtacccgg ctgcacagct
     5821 gtgatcctct ctatccccaa cccctgaccc cgagaagcag aaggacacca ccatggactt
     5881 acacagtgga gccgaatctc taaataaata tcttcaaaaa agtgtctgcg acttggcttt
     5941 tgtatataga ctttgtgaat taaaaagggc acaggtatgt gtgtgccttc ctggacagcc
     6001 agaacccagg cagtgggaat ggtggccttt tttacactct acagatgtct aatattcaat
     6061 tttaaggttt ttgtattttt ttctatgtaa acctccttca cctattcaag tcttcagtaa
     6121 agtctgctga aacaca
//
