LOCUS       XM_006238111            3741 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tudor domain containing 7 (Tdrd7),
            transcript variant X5, mRNA.
ACCESSION   XM_006238111
VERSION     XM_006238111.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006238111.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3741
                     /gene="Tdrd7"
                     /gene_synonym="Pctaire2bp"
                     /note="tudor domain containing 7; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 37
                     ESTs, 2 long SRA reads, 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 46 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:85425"
                     /db_xref="RGD:619724"
     CDS             235..3495
                     /gene="Tdrd7"
                     /gene_synonym="Pctaire2bp"
                     /codon_start=1
                     /product="tudor domain-containing protein 7 isoform X4"
                     /protein_id="XP_006238173.1"
                     /db_xref="GeneID:85425"
                     /db_xref="RGD:619724"
                     /translation="MLEADLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQL
                     GYPTLEAYLRSVPAVVRIEASRSGEIVCYAVACTETARIAQLVARQRTSKRKTGRQIN
                     CQMRVKKTMPFFLEGKPKATLRQPGFASDYSISKKPNPTLLREKGSTLGAKADVDMPP
                     YPDAPVQRHVSMSANSRFSPKSSLPAPFQTHISRACPKEVNDNLNQTVEKPNVTPPAS
                     YTNKMDEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDLNQGVLQQFEHWPHICTVE
                     KPCGGGQDLLLYPAKREQPLRSDQDPEKERPPPPPAPRQEVPSKGSPAVMPDVKEKVA
                     ELLGKYSSGLWASALPKAFEDMYKVKFPEDALKNLASLSDVCTINYISGNTQKAILYA
                     KLPLPTDKILKDEAQAQGDFDIKSMIEQEYLQIEKNMAESADDFVEDITVPPLVIPTE
                     ASPSVLVVELSNTNDVVIRYVGKDYSAAQELMEDEMKEYYSRNPRVTPIQTVHVGQLL
                     AVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCK
                     LAGLEILNDDPNLVKVVESLTCGKIFAVEILDKSDIPLVVLYDTSGEDDININATCLK
                     AICDRSLEVHLQVDAMYTNVKVTNICSDGTLYCQVPCKGLNKLNDLLHKTEDYFHCKH
                     MTSEYFISLPFCGKICLFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELRE
                     IPPRFLQEMLAIPPQAIKCCLADLPQSIGMWTPDAVLWLRDSVLNCSDCSIKVTKVDE
                     ARGVAYVYLFTPKNFPDPHRSINRQITNADLWKHQKDVFLSAVSAAASSPGNRNASTP
                     APGSPAESLRKSHPEVLRKSVLDHTSSFSLEELPPPVHLSKSGEHMDVYVPVACHPGH
                     FVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKVENKWYRVLLKGILTN
                     GLVSVYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVKCSQWSEEASMVFRN
                     HVEKKPLVALVQTVIEHANPWDRKVVVYLVDTSLPDTDTWIHDFMSQYLVELSKAN"
ORIGIN      
        1 cccgtgctgg gcagcggtac ccgagctctg cgcagttgtg ccagccccgc gggccacact
       61 gcggcggcct ccgctctcga gaccggccgg tgcaggccgc gcacatcagg caggacctac
      121 acgtagccgt tcctgtcaac cgtgagcgct ggggaggaaa caagcattca cagagaagtt
      181 gtcttggaag tcggagctga cagcttttct tctcctatcc gcttgagggc aaagatgctg
      241 gaggcagatc tggtctccaa gatgctacgg gctgtcctgc agtctcataa gaacgggata
      301 gtactgcccc ggctccaagg agagtaccgc tctttgactg gagactggat ccccttcaaa
      361 cagctgggct acccaactct ggaagcgtat ctgaggagcg tgccagcggt tgtcaggata
      421 gaggctagta gatctggaga gattgtctgc tatgctgtag cctgcacaga gactgcgagg
      481 attgctcagc ttgtggctcg tcagaggacc tctaaaagga aaacagggcg acaaattaat
      541 tgtcagatga gagtgaagaa aaccatgcca ttctttctag aagggaaacc caaggcaacc
      601 ctcagacaac caggatttgc ttcagactat tctatcagca agaaacccaa tccaacgctg
      661 ttaagagaaa aaggaagcac cttgggagct aaggctgatg tggacatgcc accttaccca
      721 gacgctccag tgcagaggca cgtgagcatg tctgccaaca gcaggttcag tccaaagtca
      781 tccctgccag cacctttcca gacacacatc tcacgggcct gccctaagga agtgaatgat
      841 aatttaaatc agactgttga gaaaccaaat gtcacgcctc ctgcctctta cactaataag
      901 atggatgagg ttcaaaaccg cataaaggaa atattagaca agcataacaa tggcatttgg
      961 atctctaagc ttccacattt ttacaaagag ttttataaag aagaccttaa ccaaggagtt
     1021 ttacagcagt ttgaacactg gcctcacatt tgcacggtgg aaaaaccttg tggtggtggt
     1081 caagatttac ttctttatcc tgccaagaga gagcagccct tgagaagtga ccaggacccc
     1141 gagaaggagc gcccacctcc accacctgct cccaggcagg aggtgccatc aaaggggagc
     1201 ccagcagtga tgccggatgt caaagagaaa gtggccgagc tgctggggaa atactcaagc
     1261 ggcctttggg caagtgcact ccctaaagca tttgaggaca tgtacaaagt caagttccct
     1321 gaggatgcct taaaaaatct tgcctcactc tctgatgtgt gcaccataaa ctacatttct
     1381 ggaaataccc agaaggcaat tctctatgca aaactcccat tgcccacaga caagatctta
     1441 aaggatgaag cgcaggcaca aggagatttt gacatcaagt caatgattga acaagagtat
     1501 ttgcagatag aaaaaaacat ggctgagagt gctgatgact ttgtggagga cataactgtg
     1561 ccgcctctgg taattcctac cgaggcttca ccgtctgtgt tggtggtgga gctgagcaac
     1621 acaaatgatg tggttatcag gtatgtaggc aaagactact cggctgccca ggagctcatg
     1681 gaagacgaga tgaaggagta ttacagtagg aaccccagag tcacaccaat ccagaccgtg
     1741 cacgtggggc agctgctggc agtcaatgca gaggaggatg cctggttacg agcacagatc
     1801 atctccacgg acgagaacaa gataaaggtg tgctatgttg actatggctt ttgtgaaaac
     1861 attgagaaga gtaaagcata ccgactgaac ccacggttct gctctctgtc ctttcaagct
     1921 acaaagtgca aactagcagg gctggagatt ctgaatgatg atcccaacct cgtgaaggtg
     1981 gtggagtcat taacgtgcgg gaagatcttt gctgtggaga tactggacaa gtcagatatc
     2041 ccactggttg tgctgtatga cacttcagga gaggatgaca tcaacatcaa tgccacctgc
     2101 ctgaaggcca tatgtgacag atctctagaa gttcatctcc aggtggacgc catgtacaca
     2161 aatgtcaaag tgactaacat ttgctctgat ggaacactct actgccaggt gccatgcaag
     2221 ggtctgaaca aactcaatga ccttctgcat aagacggagg actacttcca ctgcaagcac
     2281 atgacctctg agtacttcat ctcgctaccc ttctgtggga agatctgcct cttccattgc
     2341 aaagggaaat ggttacgagt ggagatcaca aatgttcaca gcagccgagc cctcgacgtt
     2401 cagttcctgg actctggcaa ttcgacatcc gtgaaagtgt cggaactcag agaaattcca
     2461 ccacggttcc tgcaggaaat gcttgccatc ccccctcagg ctatcaagtg ctgtttggct
     2521 gatcttccac agtccattgg catgtggaca ccagacgctg ttctttggct aagagattct
     2581 gttttgaatt gctcggactg tagtattaag gttacgaaag tggatgaggc caggggcgtg
     2641 gcctacgtgt atttattcac ccccaagaac ttcccggatc cccaccgcag catcaaccgg
     2701 cagatcacaa acgcagacct gtggaagcac cagaaggatg tgtttctgag cgctgtgtct
     2761 gctgcagcca gctctcccgg caacaggaat gccagcacac ctgctccagg cagccctgcg
     2821 gagagcctca gaaagagcca cccggaggtc ctcagaaagt ctgttctgga ccacaccagc
     2881 tctttctcct tggaggaact gccccctcct gtccacctgt caaagtcagg ggaacacatg
     2941 gatgtgtatg tgcctgtggc ctgtcaccca ggccatttcg tcatccagcc ttggcaggag
     3001 atccacaagc tggaggtgct gatggaagag atgatcctgt actacagcgt gtctgaggag
     3061 cgccacatag cggtggagag agaccaagtg tatgcagcca aagtggagaa caagtggtac
     3121 agggtgctgt taaaaggaat cctgacaaat gggctggtgt ctgtgtacga gctggactat
     3181 ggcaaacatg agctagtcaa cataaggaag gtgcagcccc tagtggacgt gttccggaag
     3241 ctgccattcc aggcagtcac tgctcaactt gcaggagtga agtgcagcca atggtcggaa
     3301 gaggcttcaa tggtgtttcg aaatcacgtg gagaagaaac ccctggtggc actggtgcag
     3361 acagttattg aacacgctaa cccttgggac cggaaagtag tggtctatct agtagacaca
     3421 tcgctgccag acactgacac ctggattcat gactttatgt cacagtatct ggtagagctt
     3481 tcaaaagcta attaatcact gcttgagacc ttgaccgtta atgcagattg ttctctaagc
     3541 aataatacaa aatgtgtagt agggtcttaa aacatcttat ttttactaca tggctctgac
     3601 tgttgtggag gattgaaaag aatatgcttt gtttgatgaa agatatttaa caagttttgt
     3661 ttaacgcagt tgacttttca aagaaaaatt gcacttgaat tattaatata atattagaat
     3721 aaaatgttta gcaatgtaaa a
//
