LOCUS       XM_039100860            9793 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tudor domain containing 12 (Tdrd12),
            transcript variant X1, mRNA.
ACCESSION   XM_039100860
VERSION     XM_039100860.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9793
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9793
                     /gene="Tdrd12"
                     /note="tudor domain containing 12; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:689639"
                     /db_xref="RGD:1562792"
     CDS             3838..7782
                     /gene="Tdrd12"
                     /codon_start=1
                     /product="putative ATP-dependent RNA helicase TDRD12
                     isoform X1"
                     /protein_id="XP_038956788.1"
                     /db_xref="GeneID:689639"
                     /db_xref="RGD:1562792"
                     /translation="MCHFSASVQPFKTKIEDPGCFWVIIKGCSHFLEQEVDYQKLNSA
                     MNDFYNSMCQDIEIKPLMLEEGQVCVVYCQELKCWCRAVIKSIISSADHYLAECFLVD
                     FAKYIPVKSKNIRVAVESFMQLPYRAKKFRLYCTKPVTLHIDFCEDNAEIVPATKWDS
                     AAIQYFQNILRATTQVEAKLCAVEEDTFEVYLYATIKNEKVCVNDDLVAKNFAYYVSP
                     MGNKNLNTLEKPRLSLNSVPCSSKLSPSLTLWPMLLQGKDCQRMENSQSLDFLAQSLQ
                     HTWCKDVVGDLGPRAAVLDKAVNYKDSLTDSPTIMFEKKQQSLPLKHMDKCIESSMYW
                     PTKRGITIYADPDIPAASVFSQKPSEKPLRLTEKKDCDEKNGCVKLLQFLNPDPLRAD
                     EISDLHQLQKVKLGTLQPGVVLRNRIEPCLTLDKSPLSADLKKALQRNKFPGPSHTAS
                     YSWPPIARGCDVVVISHCGNDPLLYLPPLLTILQMGGCYKSLPSRNGPLAVIVCPGWK
                     KAQFIFELLGDYSMSSRPLHPVLLTIGLHKDEAKNMKLPRGCDVIVTTPHSLLRLLTY
                     RSLLFLRLCHLVLDEVHVLFFEANEQMFAILDNFKKNVEVEERESAPHQIVAVGVHWN
                     RHIEHLVREFMKDPHVVITALEEAALYGSVQQVVHLCLECEKTSTLLQVLDFVPSQAQ
                     KTLIFTCSVAETEIVCKVVESNSIFCLKMHKEMAFNLKSILEQWKKKLSSGSHIVLTL
                     TDDCIPLLAITDATCVVHFSFPSSPKVFGGRLYCMSDHFQSLTEQGSPAEQGGKKTKS
                     VLLLTERNASHAVGVLRYLERADAKIPSELYEFTAGVLEAKEDKKARRPLCPYLKAFG
                     FCKDKRICPDRHHINPEMDIPRKLSNETLPVFGHIRIIPFYISNATNYFGRIIDKHVD
                     LYETLNAEMNEYFKDPSNKTAAEKVENLGLYGLEEKTLFQRVQVLEASQKEDTWGLGS
                     VLVKFIDEGRTKLITRDQLLLLPEKFHTLPPQAVEFIVCRVKPADSEIEWNPKVTRYI
                     HHKIIGKMHEAKVVFALGNTLWIDPMVHVTKLSNLKTSVIDYNVRAEILSMGMGIDNS
                     EHVEQLKKLHKEAKLPAFVDLPSQTSIPTTVEGTMCLQGTQRGDRGTERGAGSQVDPD
                     NQKPGVLSEDIGHETISKATQPHVRSFHPQIKWFQKDDHIILKIKIRNVKDYKCKFFT
                     DRVIFSAWVGDKFYLADMELQGDIRKDDCKCIIKDDEPLITLAKEKRACWCGLLKQRN
                     PNVAFDFDHWEECEEDSPFSKVVSSKTLSCKAAALAESSSSSSDMTDGSESE"
ORIGIN      
        1 taggtgctag caactgattg atgagagtgg aattccgggt ctgccagagc aaccactctt
       61 aaccacagag cagtctccat aatccatcaa gcatcttttc atgtgattag ctccattgga
      121 aaaaatgcca cctcaagtcc tcagtgcatt gtttttttgt ttgttttgtt ttgttttttt
      181 gtttgtttat ttgttttgag ctgtttggat ttatagtgtg gtgctcgagt ctcacaacac
      241 agtgttctct ttacattctg aattattagt cccttacctg aaaagtgtgg tgattcccct
      301 gcaggcttta caagcttcac gaggtgaagt aattatattg tagctgctgc tggcctttta
      361 gaatctggcc catatcattt aacttcagcc atgtttaagc acagcacaat tgtgggggtg
      421 ggggtggcga gtattcagat cacaatgaac tcagtctgaa gagtacagca atttaagacc
      481 tgtttaagat gttgagattc tttacaaacc gcgcctggtt tctttcacaa gaatgggtac
      541 tgttggctca gagatagtgc ccaagattta gggtctaggg agttagactg aggtaaatgt
      601 aacacgccgg ttggtgtttt ggttggcctg gcacagagat aacacagaag tcacttaggc
      661 tgatgaaagc acaagtgaca tcattcatga gaataggttt atgatctaaa agcatagaag
      721 aaagatctgg gctaagtaaa aacatgaatt ctgggagata tgggcagagc ctgtctcatc
      781 agacagcaaa gggtcaccag gttgttaaac tccatcgctc ctggcattcc aggaagagcg
      841 gcttcgcacc tcattccact gaataggtaa tctgtgtgtt taaccttctg gcttctccag
      901 tgcttatctg tgtgcacaag gctcttttct cctctacaga gaagtgattt tctcctactc
      961 catgatgtgc tggttactta agagttgata caacctagaa ttgatcatct gggaagagca
     1021 tctcaattag gaattaccta gatcaacctg acctgtgggc gtgtgtgtgt gtgtgtgtgt
     1081 gtgtgtgtgt gtgtgtgttg attgttaatt gatgtgagaa gacacaccct attgagggct
     1141 ttggccctcc tggatagtat aaatgagaaa gctagctgag cagaagcaag taaagatcca
     1201 ggtgtttcca ctctgggaga ctcactcctt ctagttccaa ccttggcttc atttccctgc
     1261 agtaatggac tacagcttgg aactgtaagc cagatagcct gtttctctct tgcattgttt
     1321 ttggtcacag ccacagaaag gagactagaa tacatggttg actgttacag tcatagtctc
     1381 tttggagtca tatgatacac tttttttttt ttcttttgag ctggggaccg aacccagggc
     1441 ctagcacttg ctaggcaagc gctctaccac tgagctaaat ccccaaccca tgatacactt
     1501 tcgatcagtt tagtagttta cttttccttt tgctgtgtca tagccaagca gccaatgcca
     1561 agtatagtgg aaggcttttg tattgtttgc ctccaagagt tttatagcca tcttgcattc
     1621 atgtttatta tgaggaggca catgctgtgg ctggcatccc tgtgaaagct gcagagttaa
     1681 ttctcctttg tttctatggg tttcagaaac tgagctcaaa ttaccaggct tccccagcaa
     1741 gtgagccatt ctgccagccc cggggattaa tttttctgtc tggtgctggt tcatcctttg
     1801 gcatgaagta ctcagcttcc cactaaaagt tttggacaaa caatcatttc ccctagaatg
     1861 actgtactgc ctttgtcagc tattactggg ccacattgta aaggaggtgg ctctgggacg
     1921 tttatccttc tggtctgtgt gtctgattac agtagcacca cactgtttgg attactgtgg
     1981 ttttgtagta ggttttgaaa ccaggtatga cttcctccag ctagttttgt tttgatacag
     2041 tgtcttcagc tgagactggc ctctgtcttc ttcagtagcc taatcctccc tctcaggagg
     2101 gctgggatta caggcatgca ctaccatggt gaattttatg tagtgctggg gcttcaacct
     2161 aggactccat atacggctag gcaagctgcc aataactggc tttggcatcc atgtggtagg
     2221 taaactgagg cagacagcca ctgggggtca gtgtttagag ctgttgacgg gggtggatcc
     2281 agataactat aggggctgct gacaaaggca gtcagagatt ggggatttta tctgaggaag
     2341 caaaatttaa tttactgggg caggcactcc ctgtggccag tggaaaaact atgaattctt
     2401 tggattcctt ggggccagca agaaagagga tagagaaaga attcacacgt gtatacacac
     2461 acacacacac atacacacac acacacacac acacacactt catggatgaa acaaaaggca
     2521 gtgtccaata acttcataca cacatacata cacacacata tgtgtgcata catatataca
     2581 tgcatgcata catatgtaca catatgtaca tacataacca caaacagaaa cacacattca
     2641 cacatagaat ggttagagca aagctccaac aagcaggttc caagcattct atacatacat
     2701 acatacatac atacatacat acacataatt ggtggatgga gcaagctcca agacaaaacc
     2761 agacaagttc cacatatgta catacataca catggttgat ggatggaagg aacaatgttc
     2821 cagccctcat tcacacaaac cttactcata ttcacacaca tagcgatgga tggaagaatg
     2881 ttcagcacac tctcatacaa accttgcaca tatacacata cacatagttg atggatgaaa
     2941 gcatcaatgt tccaacccac cacacacaaa cattacacat acacatggtt ggcggatgct
     3001 ccagccccca tcctttactc tttcttccat aacttatata tcccagcaaa accttttaag
     3061 cagtatacag ttacaacatg attacacttt cgttttcttt tagtgagtag ttatgaaaag
     3121 caatgtgttt tccaatgtct ttacaagaaa taacattact tactacagga aaagaaaaca
     3181 aattaactct ccagaaccca caccctgtcc taactatgca atttgtcata gattaacaaa
     3241 gtgtaagcaa gcatggtagt ttttgcagcc agttgttttt actggctctc cggccagagg
     3301 aaggctttgc tagttcccat gggtctgagg cagtgctatc cttgacatgc ctgtgcccgt
     3361 gtcaagacat tcacatagga ttttatctgt ttcttacaga ctcaggcctt tcttggctcc
     3421 catacttctg ttcttgtttt gggtttttgt tgtggttgtt tctttaacag gttataaata
     3481 ctgtctataa cttgcttatg tatatcatgt atacttttta aatattggcg atgaagggca
     3541 tctttttgcc tttgcggggg cagggtttga aacaggtttt agactcatag tctaggctgg
     3601 ttttgaactt gtgatcaccc tgcctcagcc tcttgagtta catatgtgtg ccaccatgcc
     3661 cactatgctg tttgcttttt gagttgcaca taattgagaa ttgcttgcct atttttgttt
     3721 atgtgtttca ggattttatc ttctatcaga tctttttgtt ttgtgtttcc aacagggtct
     3781 cacttctggc tattctggaa ctcactatgt agaccaggct ggcatcaacc cacataaatg
     3841 tgccatttct ctgcttcagt ccaaccgttt aagacaaaga ttgaagatcc aggttgcttc
     3901 tgggtaatta taaaaggatg tagtcatttt ttagaacaag aagttgacta ccaaaaacta
     3961 aacagtgcca tgaatgactt ctataacagc atgtgtcaag acatagaaat aaagccgtta
     4021 atgctagaag aaggccaggt gtgtgtggtg tactgtcagg agctgaagtg ctggtgcagg
     4081 gctgtgatta agtcgatcat ctcttctgca gaccattacc tggcggagtg tttccttgtg
     4141 gattttgcca agtatattcc agtaaaatct aaaaacatcc gagttgcagt agagtctttt
     4201 atgcagcttc cttacagagc aaaaaaattc agactttact gtacaaaacc tgtgacattg
     4261 cacattgact tctgtgaaga caatgctgaa attgtacctg ccacaaaatg ggacagtgca
     4321 gctatccagt actttcagaa cattctaaga gcaactaccc aagtggaagc aaagctatgc
     4381 gctgtggaag aagatacttt tgaggtttac ctttatgcaa caataaaaaa tgaaaaagtt
     4441 tgtgttaatg atgatctagt tgcaaagaat tttgcttatt atgtgtcacc aatggggaac
     4501 aaaaacctca atactttgga gaaacccagg ctgagtctca attcggtgcc ctgctccagt
     4561 aagctcagcc catcacttac tctgtggcca atgcttctgc aaggaaaaga ctgtcagaga
     4621 atggaaaact cacagagttt agattttctg gcacagtctc tccagcatac atggtgtaag
     4681 gacgttgtcg gtgacctagg accacgtgct gcagtactgg ataaagctgt aaactataag
     4741 gattccttga cagattcgcc tacaattatg tttgagaaga agcaacagag cctcccttta
     4801 aaacacatgg ataagtgcat tgaatcttct atgtactggc caacaaaaag aggcataacc
     4861 atatatgctg atccagatat tccagcagca agtgtgttta gccagaagcc aagtgagaag
     4921 ccactgcggt tgactgaaaa gaaagactgt gacgagaaga atggctgtgt aaaattacta
     4981 cagtttctaa atcctgatcc tttgagagct gatgagatct ctgacctgca ccagttgcag
     5041 aaggtgaagc tgggcacatt gcagcctggt gtggtgctcc ggaacaggat cgagccctgc
     5101 ctcacactgg ataaatcacc tctgtcagca gacctgaaga aggctcttca aagaaacaag
     5161 tttccaggac ccagccacac tgcatcttac tcttggcctc ctattgcacg tggctgtgat
     5221 gtggttgtca tttctcactg tggaaatgac cccttgttgt acctgccacc gctgcttacg
     5281 attttgcaga tggggggctg ctacaagtca ttaccaagta gaaatggacc tcttgcagtc
     5341 atcgtgtgtc cagggtggaa aaaggctcag tttatttttg agttgttggg agactatagc
     5401 atgtcctcca ggcctcttca tcctgtgtta ttaacaattg gacttcacaa agacgaagcc
     5461 aaaaatatga agcttccaag gggatgtgat gtgattgtca caacgccaca cagccttctg
     5521 agacttctca cgtaccgaag cttgttattc cttagactct gccacctggt tctggatgaa
     5581 gtgcacgtac tgttcttcga agctaacgaa caaatgtttg ccatattaga taactttaaa
     5641 aaaaacgttg aagtggagga gcgggagtct gcgccacacc agattgtagc cgtgggtgtt
     5701 cactggaaca gacacataga gcatctagtc agagagttca tgaaggatcc ccacgtcgtg
     5761 atcactgccc tggaggaggc tgccctctac ggcagtgtcc agcaggtagt gcatctgtgc
     5821 ctggagtgcg agaaaacctc gactttactc caagttcttg actttgttcc aagtcaggcc
     5881 cagaagacct tgatctttac ctgctccgta gcagagacag agattgtatg taaggtagta
     5941 gaaagcaatt caatattttg cttgaaaatg cataaagaaa tggcttttaa tttaaaaagt
     6001 attttggaac agtggaagaa gaagttaagc tctggctccc atattgtgtt aaccttaaca
     6061 gatgactgca taccgctctt ggccatcacc gatgccacat gcgtggttca cttcagcttt
     6121 ccttcctcac caaaagtatt tggtggacgc ctgtattgca tgtctgatca ttttcagagt
     6181 ttaactgagc agggctcacc tgcagagcag ggaggtaaga aaacgaaatc tgtcctactg
     6241 ctgacggaga ggaatgccag ccatgccgtc ggggtcctgc gatacttgga gcgagcagat
     6301 gccaaaattc catcggagct gtatgagttt actgcagggg tcctggaagc caaagaagat
     6361 aagaaagcta gaagacctct ctgtccatat cttaaagctt ttggcttttg caaagacaaa
     6421 aggatctgtc ctgaccggca ccacattaat ccagaaatgg acatcccaag gaaattatcc
     6481 aatgaaactc taccagtgtt tgggcacatt aggataatac ctttttacat ttcaaatgca
     6541 accaattatt ttggccgtat aattgataaa catgtggatc tttatgaaac tctcaatgca
     6601 gaaatgaatg aatattttaa ggatcccagt aataaaacag ctgctgaaaa ggtggaaaat
     6661 ttggggttgt atggattaga agaaaaaaca cttttccaga gggttcaggt gttggaagcg
     6721 agccagaagg aagacacctg gggtttgggg agtgtcctgg tgaaattcat agatgaaggc
     6781 aggaccaagc tcatcacaag agaccagctg ctgctgctcc cagagaagtt tcacactctg
     6841 ccccctcagg ctgtggagtt cattgtttgt agggttaaac cagctgacag tgaaattgaa
     6901 tggaacccaa aggttactag atacattcat cataaaatta ttgggaaaat gcatgaggcc
     6961 aaggtggtat tcgctttggg aaataccctt tggattgatc caatggtgca tgttacaaaa
     7021 ctttcaaatt taaaaacttc tgtcattgat tataatgttc gagctgaaat tttgtccatg
     7081 ggaatgggta ttgataattc agaacatgta gaacaactga aaaaactaca caaagaagct
     7141 aagctgccag cctttgtgga ccttccaagc cagacttcga tacccacaac agtagaaggc
     7201 accatgtgtt tgcagggcac tcagcgagga gacagaggta cagaaagagg agctggttcc
     7261 caggtggacc cagacaacca aaagcctgga gttttatctg aagacattgg ccatgagacc
     7321 attagcaaag ctacacagcc acatgtgaga agctttcacc cacaaataaa gtggttccaa
     7381 aaggatgacc acatcatctt aaagataaaa ataaggaatg tcaaagacta taagtgtaaa
     7441 ttctttacag atagagtcat tttcagtgcc tgggtaggag acaagtttta cttggctgat
     7501 atggaactgc aaggtgacat aaggaaagat gactgcaaat gcataattaa ggatgatgag
     7561 cctctaatca cacttgcaaa agagaaacgg gcatgctggt gtggcctcct caagcagagg
     7621 aatcctaatg tggcttttga ctttgaccac tgggaggagt gtgaagagga cagccctttc
     7681 tccaaggtcg taagttctaa aaccctgtcc tgcaaagcgg cagcactggc tgaaagcagc
     7741 agctcctctt cagacatgac tgacgggagt gagagcgaat gaggccgtgc atggaccaac
     7801 gccagcgaga agacagacaa ctgcacacac agtcacggcc aacccttttc acctggagag
     7861 tgacttgtca ctgtcattgt gtggcactgc catggatgat gatgagaagt tcttaattga
     7921 tttaaagtgg gtagacaagc caagtgatag gttatgatga gattgtcaaa ggagagtcca
     7981 caatcaggga cacagaaagt tagggacatt tttaattcta gccctcagga gattgaggca
     8041 ggaggattac aagtttgagg gcagccagga ctatataggg aggttctgtt tccaaaaatg
     8101 tgttttccat caaaggtcct gtgtaaccca agtgtatgca gtgtgtcctc tcactgactc
     8161 tcttagctca tcctgactac tgatcgtaga gacggagagc aaaccctaac actaggtagt
     8221 agattgatct tgtaaggagt tagtctactc aattgccgtg tagacccgtg tgtggcactg
     8281 cttaaaactt gtctctcacg cagaaactgg agagtctgtc ttacactttt acacccagcc
     8341 ggacttgcca gcccctttca ccacaggacc taaatgccca actgcgccat acaaaaactc
     8401 cctaaatttt cctggctttg acagctacta agagatacaa attgacttct tttccccaaa
     8461 ggcaagatag atttgcctca gctcagtgga accctgggca gaactttctt tcagaaatgc
     8521 ttataggact tactaacctt cagactcccc ggatgtggtg agtcctgaga acactaatgg
     8581 caaatctgaa tgaatgcagc tgtaacaccc cggtttgggg acagggtgtg tggttatcgt
     8641 ttaaatgtca ctgacacagt tgggaaggtg agtgtgggaa cttcacaacc cagtgtctta
     8701 gcatctccgc atcagtgtcc ctcaagtgag aagggacatg gatggagccg cactgttgag
     8761 ggacggactc ccctaagcat atcctatgct ctccatatca gaaagtaccg atattcagag
     8821 atgcgcccat gcctgtcatt ccagcatatg agaggtggag acaggaggac caagaagtgt
     8881 caggccagcc tgggctacat aagaactagt gtcaaaacct gaagaaaaaa gaaaaagaaa
     8941 cagagatgtc aagagttctg taaccccaag agttagccgt tgcacaggcg aggaggcaac
     9001 gtctcctggc tttctgtgcc agagggctgg gcccacactg gttcttggtt ttcttatctg
     9061 taaaataaga cctgagcaca ttcagcccac gagagtccag ggtgttgtgg ggtgggcacc
     9121 tggctttcac agtgactgtg agggggtcag acctgtgcca ggagtcagag actgcctagc
     9181 ctgggccgct accaggaaga catccttttt gctgctatga ctcttgggtt ggtagtccca
     9241 tatcagaggg ccataatgca aagtggttct tgacaaagca gaaagcatgg tgtcttgctg
     9301 gaacatttca actgtgagac tggtccattt gtacagatgc aggtccaccc aggtggtgga
     9361 gggctgtggt gacactgaac actgagttga gtgcaagtgg cagactgtct cagaagaccc
     9421 agcgaaatgg gacacagctc tgtttacatc attttttttc aggtggtcag attttccaat
     9481 acttaaccct ctgagcaaaa tcttgtagca catgggaggc tatgctgaca gtcagctatt
     9541 gccttctgta ttatactaaa ctctactgat tgaggtacac ttctgaaata tgacatggaa
     9601 atacttgaag agttagtgct ctagaattgc tcccatatga tatgagcatc tttgtggtgg
     9661 attatcaata aagctccagt gtaatgttgg tcacaggttt ttgttctgca tcgaatgcaa
     9721 aggaacattc acacttctag aaagtaaaat gccagcaaag gcagtgagtt ggttgtgcgt
     9781 gatgctgacc cca
//
