LOCUS       XM_039082887            1162 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus teratocarcinoma-derived growth factor
            1 (Tdgf1), mRNA.
ACCESSION   XM_039082887
VERSION     XM_039082887.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 42% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1162
                     /gene="Tdgf1"
                     /note="teratocarcinoma-derived growth factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 30% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:680246"
                     /db_xref="RGD:1594185"
     CDS             1..912
                     /gene="Tdgf1"
                     /codon_start=1
                     /product="teratocarcinoma-derived growth factor 1"
                     /protein_id="XP_038938815.1"
                     /db_xref="GeneID:680246"
                     /db_xref="RGD:1594185"
                     /translation="MVLRAKHRSKPGPLRVLRWWLAGVHRTPGDVNSQSAQRGLSNRP
                     PKQPRRLPTQLLRSRKTGAPTPRPLGQRPPPPPPLTFPVLVGADSQSLVASRHAVIRF
                     RSCLQPHEEHPPAEGLPCLCANRLYFVVLLVAISNAFEFGLVAGIGRRELAVPSPRDL
                     DVRDNDIRDQEEPALRPRSLQLVPSVGIQSNKLLNKTCCLNGGTCILGSFCACPPSFY
                     GRNCEHDVRKEHCGSVLHGAWLPKKCSLCRCWHGQLHCFPQTFLPGCDGYVMDQDLKV
                     SRTPRQTPSVPTTVMLAGICLFLEMKV"
ORIGIN      
        1 atggttctta gagctaagca ccggtcaaag cctggtcctc tccgagtgct tagatggtgg
       61 ctggctggag ttcaccgcac acctggtgac gtaaacagcc aaagcgcaca acgcgggctc
      121 agcaaccggc cccctaagca gccgcgacgt ctccctactc agcttctgcg cagtcgcaag
      181 accggcgctc ccacccctcg gccgctgggg cagagaccac cccccccccc cccactcacc
      241 ttccctgtgc tagtgggcgc tgacagtcag tccctggtcg caagccgcca cgctgtaatc
      301 cgttttcgaa gctgtttaca gccgcacgaa gaacaccccc ctgcggaagg gctaccgtgc
      361 ctgtgcgcta acaggctata ttttgtggtt ttacttgtgg ccatttccaa tgcatttgaa
      421 tttggacttg ttgctgggat aggccgccgt gagctggctg ttccgtctcc gagagacctc
      481 gacgtcagag ataacgacat tcgggaccag gaagaacctg cactacgccc tcgctctctc
      541 cagcttgtgc cttccgtggg gatacagagc aataagttgc ttaataaaac ttgctgtctg
      601 aatggaggga cctgcatcct ggggtccttc tgtgcctgtc ctccttcctt ctacggacgc
      661 aactgtgagc acgatgtacg caaagagcac tgtgggtctg tcctccatgg cgcctggctg
      721 cccaagaagt gctccctgtg caggtgctgg cacggccagc tccactgttt tcctcagacc
      781 tttctacctg gctgtgatgg ttacgtgatg gaccaagacc tcaaggtatc caggactcca
      841 cgccaaacac cgtctgtgcc aaccactgtt atgctagctg gcatctgcct tttcctagaa
      901 atgaaagtat aggttgacac gtgaattcga cacccacgtc atagcagaga tgtcattcgt
      961 cttaaataat gctcacagtg aatccctaac atcacccctc caaacgctaa ctaggcctta
     1021 cctctgcgtg gcccctcttt ctggatgtgc tggctataaa cgccacggtg tgtgtgtgac
     1081 aagtgctgta actccatagc ctaaaaacta ctctaaaggg cggagtgaaa aaaaaaaact
     1141 actctaaaaa tgtgctgtct gc
//
